av.setGlobalColourScheme(new ZappoColourScheme());
// @see ResidueProperties.zappo
- assertEquals(Color.pink,
- rcf.getResidueColour(true, av.getResidueShading(), null, seq, 0,
- null)); // M
- assertEquals(Color.green,
- rcf.getResidueColour(true, av.getResidueShading(), null, seq, 2,
- null)); // T
- assertEquals(Color.magenta,
- rcf.getResidueColour(true, av.getResidueShading(), null, seq, 5,
- null)); // G
- assertEquals(Color.orange,
- rcf.getResidueColour(true, av.getResidueShading(), null, seq,
- 12,
- null)); // F
+ assertEquals(Color.pink, rcf.getResidueColour(true,
+ av.getResidueShading(), null, seq, 0, null)); // M
+ assertEquals(Color.green, rcf.getResidueColour(true,
+ av.getResidueShading(), null, seq, 2, null)); // T
+ assertEquals(Color.magenta, rcf.getResidueColour(true,
+ av.getResidueShading(), null, seq, 5, null)); // G
+ assertEquals(Color.orange, rcf.getResidueColour(true,
+ av.getResidueShading(), null, seq, 12, null)); // F
// everything is white if showBoxes is false
assertEquals(Color.white, rcf.getResidueColour(false,
final AlignViewport av = new AlignViewport(al);
ResidueColourFinder rcf = new ResidueColourFinder();
- assertEquals(Color.white,
- rcf.getResidueColour(true, av.getResidueShading(),
- null, seq, 0, null));
- assertEquals(Color.white,
- rcf.getResidueColour(true, av.getResidueShading(),
- null, seq, 2, null));
+ assertEquals(Color.white, rcf.getResidueColour(true,
+ av.getResidueShading(), null, seq, 0, null));
+ assertEquals(Color.white, rcf.getResidueColour(true,
+ av.getResidueShading(), null, seq, 2, null));
// no change if showBoxes is false
assertEquals(Color.white, rcf.getResidueColour(false,
// gap colour specified as pink
assertEquals(Color.pink, rcf.getResidueColour(true,
- av.getResidueShading(),
- null, seq, 3, null));
+ av.getResidueShading(), null, seq, 3, null));
// everything is white if showBoxes is false
newColours[23] = null;
assertEquals(Color.white, rcf.getResidueColour(false,
- av.getResidueShading(),
- null, seq, 3, null));
+ av.getResidueShading(), null, seq, 3, null));
newColours[23] = Color.pink;
av.setGlobalColourScheme(new UserColourScheme(newColours));