Merge branch 'develop' into update_212_Dec_merge_with_21125_chamges

[jalview.git] / test / jalview / renderer / seqfeatures / FeatureColourFinderTest.java

diff --git a/test/jalview/renderer/seqfeatures/FeatureColourFinderTest.java b/test/jalview/renderer/seqfeatures/FeatureColourFinderTest.java
index fd90999..c22ce7d 100644 (file)
--- a/test/jalview/renderer/seqfeatures/FeatureColourFinderTest.java
+++ b/test/jalview/renderer/seqfeatures/FeatureColourFinderTest.java
@@ -1,3 +1,23 @@
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
 package jalview.renderer.seqfeatures;
 
 import static org.testng.Assert.assertEquals;
@@ -5,12 +25,12 @@ import static org.testng.Assert.assertFalse;
 import static org.testng.Assert.assertNotEquals;
 import static org.testng.Assert.assertNull;
 import static org.testng.Assert.assertTrue;
-
 import java.awt.Color;
 import java.util.List;
 
 import org.testng.annotations.BeforeClass;
 import org.testng.annotations.BeforeMethod;
+import org.testng.annotations.BeforeTest;
 import org.testng.annotations.Test;
 
 import jalview.api.FeatureColourI;
@@ -24,6 +44,7 @@ import jalview.schemes.FeatureColour;
 import jalview.viewmodel.seqfeatures.FeatureRendererModel;
 import jalview.viewmodel.seqfeatures.FeatureRendererModel.FeatureSettingsBean;
 
+
 /**
  * Unit tests for feature colour determination, including but not limited to
  * <ul>
@@ -143,6 +164,26 @@ public class FeatureColourFinderTest
     assertNull(c);
   }
 
+  /**
+   * Nested features coloured by label - expect the colour of the enclosed
+   * feature
+   */
+  @Test(groups = "Functional")
+  public void testFindFeatureColour_nestedFeatures()
+  {
+    SequenceFeature sf1 = new SequenceFeature("domain", "peptide", 1, 120, 0f, null);
+    seq.addSequenceFeature(sf1);
+    SequenceFeature sf2 = new SequenceFeature("domain", "binding", 10, 20,
+            0f, null);
+    seq.addSequenceFeature(sf2);
+    FeatureColourI fc = new FeatureColour(Color.red);
+    fc.setColourByLabel(true);
+    fr.setColour("domain", fc);
+    fr.featuresAdded();
+    av.setShowSequenceFeatures(true);
+    Color c = finder.findFeatureColour(null, seq, 15);
+    assertEquals(c, fr.getColor(sf2, fc));
+  }
   @Test(groups = "Functional")
   public void testFindFeatureColour_multipleFeaturesAtPositionNoTransparency()
   {