AlignFrame af = new FileLoader().LoadFileWaitTillLoaded(FASTA,
DataSourceType.PASTE);
AlignmentI al = af.getViewport().getAlignment();
- ColourSchemeI cs = new ClustalxColourScheme(al, null);
+ ClustalxColourScheme cs = new ClustalxColourScheme(al, null);
/*
* column 1 is 70% A which is above Clustalx threshold of 60%
// TODO more test cases; check if help documentation matches implementation
}
-
- // @formatter:on
/**
* Test for colour calculation when the consensus percentage ignores gapped