+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
package jalview.schemes;
-import static org.junit.Assert.*;
+import static org.testng.AssertJUnit.assertTrue;
-import jalview.datamodel.AlignmentI;
-import jalview.datamodel.ColumnSelection;
-import jalview.datamodel.Sequence;
-import jalview.datamodel.SequenceI;
-
-import java.io.IOException;
import java.util.Map;
-import org.junit.AfterClass;
-import org.junit.BeforeClass;
-import org.junit.Test;
+import org.testng.annotations.Test;
public class DnaCodonTests
{
- @Test
+ @Test(groups = { "Functional" })
public void testAmbiguityCodeGeneration()
{
- assertTrue(ResidueProperties.ambiguityCodes.size()>0);
+ assertTrue(ResidueProperties.ambiguityCodes.size() > 0);
}
- @Test
- public void testAmbiguityCodon() {
- for (String ac:ResidueProperties.ambiguityCodes.keySet())
+
+ @Test(groups = { "Functional" })
+ public void testAmbiguityCodon()
+ {
+ for (String ac : ResidueProperties.ambiguityCodes.keySet())
{
- assertTrue("Couldn't resolve GGN as glycine codon",ResidueProperties.codonHash2.get("GG"+ac).equals("G"));
+ assertTrue("Couldn't resolve GGN as glycine codon",
+ ResidueProperties.codonHash2.get("GG" + ac).equals("G"));
}
}
- @Test
- public void regenerateCodonTable() {
- for (Map.Entry<String, String> codon:ResidueProperties.codonHash2.entrySet())
+
+ @Test(groups = { "Functional" })
+ public void regenerateCodonTable()
+ {
+ for (Map.Entry<String, String> codon : ResidueProperties.codonHash2
+ .entrySet())
{
- System.out.println("ResidueProperties.codonHash2.set(\""+codon.getKey()+"\", \""+codon.getValue()+"\");");
+ System.out.println("ResidueProperties.codonHash2.set(\""
+ + codon.getKey() + "\", \"" + codon.getValue() + "\");");
}
}
}