import org.testng.annotations.Test;
-public class HMMERAlignmentColourSchemeTest {
+public class HmmerLocalBackgroundTest {
@Test(groups = "Functional")
public void testFindColour() throws MalformedURLException, IOException
SequenceI seq1 = new Sequence("seq1", "AAMMMKKKVV");
SequenceI seq2 = new Sequence("seq2", "aAM-QKRSSSL");
AnnotatedCollectionI ac = new Alignment(new SequenceI[] { seq1, seq2 });
- ColourSchemeI scheme = new HMMERAlignmentColourScheme(ac,
+ ColourSchemeI scheme = new HmmerLocalBackground(ac,
file.getHMM());
/*