import jalview.datamodel.Profile;
import jalview.datamodel.ProfileI;
+import jalview.datamodel.Profiles;
import java.awt.Color;
* SR-T
* SR-T
*/
- ProfileI[] profiles = new ProfileI[4];
+ ProfileI[] profiles = new ProfileI[4];
profiles[0] = new Profile(4, 0, 2, "AS");
profiles[1] = new Profile(4, 0, 4, "R");
profiles[2] = new Profile(4, 4, 0, "");
profiles[3] = new Profile(4, 1, 2, "T");
ResidueColourScheme rcs = new ResidueColourScheme();
- rcs.setConsensus(profiles);
+ rcs.setConsensus(new Profiles(profiles));
/*
* no threshold