/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
- * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
*
* PURPOSE. See the GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
*/
package jalview.schemes;
+import jalview.api.analysis.ScoreModelI;
+
import java.util.Map;
import org.junit.Test;
@Test
public void printAllMatrices()
{
- for (Map.Entry<String,ScoreMatrix> sm:((Map<String, ScoreMatrix>) ResidueProperties.scoreMatrices).entrySet())
+ for (Map.Entry<String,ScoreModelI> sm: ResidueProperties.scoreMatrices.entrySet())
{
System.out.println("Matrix "+sm.getKey());
System.out.println(sm.getValue().toString());
@Test
public void printHTMLMatrices()
{
- for (Map.Entry<String,ScoreMatrix> sm:((Map<String, ScoreMatrix>) ResidueProperties.scoreMatrices).entrySet())
+ for (Map.Entry<String,ScoreModelI> _sm: ResidueProperties.scoreMatrices.entrySet())
{
- System.out.println("Matrix "+sm.getKey());
- System.out.println(sm.getValue().outputMatrix(true));
+ if (_sm.getValue() instanceof ScoreMatrix)
+ {
+ ScoreMatrix sm = (ScoreMatrix) _sm.getValue();
+ System.out.println("Matrix "+_sm.getKey());
+ System.out.println(sm.outputMatrix(true));
+ }
}
}