JAL-2136 merged and resolved conflicts with 80edaa84d6d9beac9f0d2c71b50b7b56fd393427

[jalview.git] / test / jalview / structures / models / AAStructureBindingModelTest.java

diff --git a/test/jalview/structures/models/AAStructureBindingModelTest.java b/test/jalview/structures/models/AAStructureBindingModelTest.java
index 0d00169..1325513 100644 (file)
--- a/test/jalview/structures/models/AAStructureBindingModelTest.java
+++ b/test/jalview/structures/models/AAStructureBindingModelTest.java
@@ -30,7 +30,8 @@ import jalview.datamodel.PDBEntry;
 import jalview.datamodel.PDBEntry.Type;
 import jalview.datamodel.Sequence;
 import jalview.datamodel.SequenceI;
-import jalview.io.AppletFormatAdapter;
+import jalview.gui.JvOptionPane;
+import jalview.io.DataSourceType;
 import jalview.structure.AtomSpec;
 import jalview.structure.StructureSelectionManager;
 import jalview.structures.models.AAStructureBindingModel.SuperposeData;
@@ -38,6 +39,7 @@ import jalview.structures.models.AAStructureBindingModel.SuperposeData;
 import java.util.Arrays;
 import java.util.List;
 
+import org.testng.annotations.BeforeClass;
 import org.testng.annotations.BeforeMethod;
 import org.testng.annotations.Test;
 
@@ -49,6 +51,14 @@ import org.testng.annotations.Test;
  */
 public class AAStructureBindingModelTest
 {
+
+  @BeforeClass(alwaysRun = true)
+  public void setUpJvOptionPane()
+  {
+    JvOptionPane.setInteractiveMode(false);
+    JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION);
+  }
+
   /*
    * Scenario: Jalview has 4 sequences, corresponding to 1YCS (chains A and B), 3A6S|B, 1OOT|A
    */
@@ -104,7 +114,6 @@ public class AAStructureBindingModelTest
     pdbFiles[0] = new PDBEntry("1YCS", "A", Type.PDB, "INLINE1YCS");
     pdbFiles[1] = new PDBEntry("3A6S", "B", Type.PDB, "INLINE3A6S");
     pdbFiles[2] = new PDBEntry("1OOT", "A", Type.PDB, "INLINE1OOT");
-    String[][] chains = new String[3][];
     SequenceI[][] seqs = new SequenceI[3][];
     seqs[0] = new SequenceI[] { seq1a, seq1b };
     seqs[1] = new SequenceI[] { seq2 };
@@ -112,13 +121,14 @@ public class AAStructureBindingModelTest
     StructureSelectionManager ssm = new StructureSelectionManager();
 
     ssm.setMapping(new SequenceI[] { seq1a, seq1b }, null, PDB_1,
-            AppletFormatAdapter.PASTE);
+            DataSourceType.PASTE, null);
     ssm.setMapping(new SequenceI[] { seq2 }, null, PDB_2,
-            AppletFormatAdapter.PASTE);
+            DataSourceType.PASTE, null);
     ssm.setMapping(new SequenceI[] { seq3 }, null, PDB_3,
-            AppletFormatAdapter.PASTE);
+            DataSourceType.PASTE, null);
+
 
-    testee = new AAStructureBindingModel(ssm, pdbFiles, seqs, chains, null)
+    testee = new AAStructureBindingModel(ssm, pdbFiles, seqs, null)
     {
       @Override
       public String[] getPdbFile()
@@ -140,6 +150,12 @@ public class AAStructureBindingModelTest
       public void highlightAtoms(List<AtomSpec> atoms)
       {
       }
+
+      @Override
+      public List<String> getChainNames()
+      {
+        return null;
+      }
     };
   }