JAL-2344 added FileFormatI.isStructureFile()

[jalview.git] / test / jalview / structures / models / AAStructureBindingModelTest.java

diff --git a/test/jalview/structures/models/AAStructureBindingModelTest.java b/test/jalview/structures/models/AAStructureBindingModelTest.java
index 6805bc6..1dcbd44 100644 (file)
--- a/test/jalview/structures/models/AAStructureBindingModelTest.java
+++ b/test/jalview/structures/models/AAStructureBindingModelTest.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b2)
- * Copyright (C) 2015 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -30,7 +30,7 @@ import jalview.datamodel.PDBEntry;
 import jalview.datamodel.PDBEntry.Type;
 import jalview.datamodel.Sequence;
 import jalview.datamodel.SequenceI;
-import jalview.io.AppletFormatAdapter;
+import jalview.io.DataSourceType;
 import jalview.structure.AtomSpec;
 import jalview.structure.StructureSelectionManager;
 import jalview.structures.models.AAStructureBindingModel.SuperposeData;
@@ -104,7 +104,6 @@ public class AAStructureBindingModelTest
     pdbFiles[0] = new PDBEntry("1YCS", "A", Type.PDB, "INLINE1YCS");
     pdbFiles[1] = new PDBEntry("3A6S", "B", Type.PDB, "INLINE3A6S");
     pdbFiles[2] = new PDBEntry("1OOT", "A", Type.PDB, "INLINE1OOT");
-    String[][] chains = new String[3][];
     SequenceI[][] seqs = new SequenceI[3][];
     seqs[0] = new SequenceI[] { seq1a, seq1b };
     seqs[1] = new SequenceI[] { seq2 };
@@ -112,13 +111,13 @@ public class AAStructureBindingModelTest
     StructureSelectionManager ssm = new StructureSelectionManager();
 
     ssm.setMapping(new SequenceI[] { seq1a, seq1b }, null, PDB_1,
-            AppletFormatAdapter.PASTE);
+            DataSourceType.PASTE);
     ssm.setMapping(new SequenceI[] { seq2 }, null, PDB_2,
-            AppletFormatAdapter.PASTE);
+            DataSourceType.PASTE);
     ssm.setMapping(new SequenceI[] { seq3 }, null, PDB_3,
-            AppletFormatAdapter.PASTE);
+            DataSourceType.PASTE);
 
-    testee = new AAStructureBindingModel(ssm, pdbFiles, seqs, chains, null)
+    testee = new AAStructureBindingModel(ssm, pdbFiles, seqs, null)
     {
       @Override
       public String[] getPdbFile()
@@ -140,6 +139,12 @@ public class AAStructureBindingModelTest
       public void highlightAtoms(List<AtomSpec> atoms)
       {
       }
+
+      @Override
+      public List<String> getChainNames()
+      {
+        return null;
+      }
     };
   }