import jalview.io.FileFormats;
import jalview.schemes.ColourSchemeI;
import jalview.structure.AtomSpec;
-import jalview.structure.StructureMappingcommandSet;
import jalview.structure.StructureSelectionManager;
import jalview.structures.models.AAStructureBindingModel.SuperposeData;
}
@Override
- protected StructureMappingcommandSet[] getColourBySequenceCommands(
- String[] files, SequenceRenderer sr, AlignmentViewPanel avp)
+ protected String[] getColourBySequenceCommands(String[] files,
+ AlignmentViewPanel avp)
{
// TODO Auto-generated method stub
return null;
}
@Override
- public List<String> getChainNames()
- {
- // TODO Auto-generated method stub
- return null;
- }
-
- @Override
- protected void colourBySequence(
- StructureMappingcommandSet[] colourBySequenceCommands)
+ protected void colourBySequence(String[] colourBySequenceCommands)
{
// TODO Auto-generated method stub
StructureSelectionManager ssm = new StructureSelectionManager();
ssm.setMapping(new SequenceI[] { seq1a, seq1b }, null, PDB_1,
- DataSourceType.PASTE);
+ DataSourceType.PASTE, null);
ssm.setMapping(new SequenceI[] { seq2 }, null, PDB_2,
- DataSourceType.PASTE);
+ DataSourceType.PASTE, null);
ssm.setMapping(new SequenceI[] { seq3 }, null, PDB_3,
- DataSourceType.PASTE);
+ DataSourceType.PASTE, null);
testee = new AAStructureBindingModel(ssm, pdbFiles, seqs, null)
{
}
@Override
- public List<String> getChainNames()
- {
- return null;
- }
-
- @Override
public void setJalviewColourScheme(ColourSchemeI cs)
{
}
}
@Override
- protected StructureMappingcommandSet[] getColourBySequenceCommands(
- String[] files, SequenceRenderer sr, AlignmentViewPanel avp)
+ protected String[] getColourBySequenceCommands(
+ String[] files, AlignmentViewPanel avp)
{
return null;
}
}
@Override
- protected void colourBySequence(
- StructureMappingcommandSet[] colourBySequenceCommands)
+ protected void colourBySequence(String[] colourBySequenceCommands)
{
}