import jalview.schemes.JalviewColourScheme;
import jalview.structure.AtomSpec;
import jalview.structure.AtomSpecModel;
-import jalview.structure.StructureCommandsI.SuperposeData;
+import jalview.structure.StructureCommandI;
import jalview.structure.StructureMapping;
import jalview.structure.StructureSelectionManager;
}
@Override
- protected List<String> executeCommand(String command,
+ protected List<String> executeCommand(StructureCommandI command,
boolean getReply)
{
return null;
}
@Override
- protected int getModelNoForFile(String chainId)
+ protected String getModelIdForFile(String chainId)
{
- return 0;
+ return "";
}
@Override
}
@Override
- protected List<String> executeCommand(String command,
+ protected List<String> executeCommand(StructureCommandI command,
boolean getReply)
{
return null;
}
@Override
- protected int getModelNoForFile(String chainId)
+ protected String getModelIdForFile(String chainId)
{
- return 0;
+ return "";
}
@Override
/*
* create a data bean to hold data per structure file
*/
- SuperposeData[] structs = new SuperposeData[testee.getStructureFiles().length];
+ AAStructureBindingModel.SuperposeData[] structs = new AAStructureBindingModel.SuperposeData[testee.getStructureFiles().length];
for (int i = 0; i < structs.length; i++)
{
- structs[i] = new SuperposeData(al.getWidth(), 0);
+ structs[i] = new AAStructureBindingModel.SuperposeData(al.getWidth(), "0");
}
/*
* initialise BitSet of 'superposable columns' to true (would be false for
@Test(groups = { "Functional" })
public void testFindSuperposableResidues_hiddenColumn()
{
- SuperposeData[] structs = new SuperposeData[al.getHeight()];
+ AAStructureBindingModel.SuperposeData[] structs = new AAStructureBindingModel.SuperposeData[al.getHeight()];
for (int i = 0; i < structs.length; i++)
{
- structs[i] = new SuperposeData(al.getWidth(), 0);
+ structs[i] = new AAStructureBindingModel.SuperposeData(al.getWidth(), "0");
}
/*
* initialise BitSet of 'superposable columns' to true (would be false for