import jalview.api.SequenceRenderer;
import jalview.datamodel.Alignment;
import jalview.datamodel.AlignmentI;
-import jalview.datamodel.ColumnSelection;
+import jalview.datamodel.HiddenColumns;
import jalview.datamodel.PDBEntry;
import jalview.datamodel.PDBEntry.Type;
import jalview.datamodel.Sequence;
@Override
public String superposeStructures(AlignmentI[] als, int[] alm,
- ColumnSelection[] alc)
+ HiddenColumns[] alc)
{
return null;
}
@Override
protected StructureMappingcommandSet[] getColourBySequenceCommands(
- String[] files, SequenceRenderer sr, FeatureRenderer fr,
- AlignmentI alignment)
- {
- return null;
- }
-
- @Override
- public FeatureRenderer getFeatureRenderer(AlignmentViewPanel alignment)
+ String[] files, SequenceRenderer sr, AlignmentViewPanel avp)
{
return null;
}
public void colourByCharge()
{
}
+
+ @Override
+ public FeatureRenderer getFeatureRenderer(
+ AlignmentViewPanel alignment)
+ {
+ return null;
+ }
};
}
assertFalse(matched.get(4)); // superposable, but hidden, column
assertTrue(matched.get(5));
}
-
- public FeatureRenderer getFeatureRenderer(AlignmentViewPanel alignment)
- {
- return null;
- }
-
- public SequenceRenderer getSequenceRenderer(AlignmentViewPanel alignment)
- {
- return null;
- }
}