import static org.testng.AssertJUnit.assertFalse;
import static org.testng.AssertJUnit.assertTrue;
+import java.io.File;
+import java.io.FileWriter;
import java.util.Arrays;
import java.util.HashMap;
import java.util.Vector;
+import org.testng.annotations.BeforeClass;
import org.testng.annotations.Test;
public class IdentifiersUrlProviderTest
"MIR:00000011|http://identifiers.org/interpro/$DB_ACCESSION$",
"MIR:00000372|http://identifiers.org/ena.embl/$DB_ACCESSION$"};
+ private static final String[] dlinks1 = {
+ "MIR:00000011|http://identifiers.org/interpro/$DB_ACCESSION$",
+ "MIR:00000372|http://identifiers.org/ena.embl/$DB_ACCESSION$" };
+
+ private static final String[] dlinks2 = {
+ "MIR:00000005|http://identifiers.org/uniprot/$DB_ACCESSION$",
+ "MIR:00000011|http://identifiers.org/interpro/$DB_ACCESSION$" };
+
private static final String stringLinks = "MIR:00000005|http://identifiers.org/uniprot/$DB_ACCESSION$"
+ "MIR:00000011|http://identifiers.org/interpro/$DB_ACCESSION$"
+ "MIR:00000372|http://identifiers.org/ena.embl/$DB_ACCESSION$";
-
private static final Vector<String> displayLinks = new Vector<String>(
Arrays.asList(dlinks));
+ private static final Vector<String> displayLinks1 = new Vector<String>(
+ Arrays.asList(dlinks1));
+
+ private static final Vector<String> displayLinks2 = new Vector<String>(
+ Arrays.asList(dlinks2));
+
private static final HashMap<String, String> urlMap = new HashMap<String, String>()
{
{
}
};
+ private String testfile = "";
+
+
+ @BeforeClass(alwaysRun = true)
+ public void setup()
+ {
+ // setup test ids in a file
+ File outFile = null;
+ try
+ {
+ outFile = File.createTempFile("testidsfile", "txt");
+ outFile.deleteOnExit();
+
+ FileWriter fw = new FileWriter(outFile);
+ fw.write(testIdOrgFile);
+ fw.close();
+
+ testfile = outFile.getAbsolutePath();
+
+ } catch (Exception ex)
+ {
+ System.err.println(ex);
+ }
+ }
+
/*
* Test urls are set and returned correctly
*/
{
// creation from cached id list
String idList = "MIR:00000005|MIR:00000011|MIR:00000372";
- UrlProviderI idProv = new IdentifiersUrlProvider(idList, testIdOrgFile);
+ UrlProviderI idProv = new IdentifiersUrlProvider(idList, testfile);
assertTrue(displayLinks.containsAll(idProv.getLinksForDisplay()));
// because UrlProvider does not guarantee order of links, we can't just
// compare the output of writeUrlsAsString to a string, hence the hoops here
String result = idProv.writeUrlsAsString();
- UrlProviderI up = new IdentifiersUrlProvider(result, testIdOrgFile);
+ UrlProviderI up = new IdentifiersUrlProvider(result, testfile);
assertTrue(displayLinks.containsAll(up.getLinksForDisplay()));
}
{
// creation from cached id list
String idList = "MIR:00000005|MIR:00000011|MIR:00000372";
- UrlProviderI idProv = new IdentifiersUrlProvider(idList, testIdOrgFile);
+ UrlProviderI idProv = new IdentifiersUrlProvider(idList, testfile);
// initially no default
assertEquals(null, idProv.getDefaultUrl());
{
// creation from cached id list
String idList = "MIR:00000005|MIR:00000011|MIR:00000372";
- UrlProviderI idProv = new IdentifiersUrlProvider(idList, testIdOrgFile);
+ UrlProviderI idProv = new IdentifiersUrlProvider(idList, testfile);
// set url links
String[] ids = { "MIR:00000372", "MIR:00000011" };
Vector<String> names = new Vector<String>(Arrays.asList(ids));
Vector<String> urls = null;
idProv.setUrlLinks(names, urls);
- assertEquals(names, idProv.getLinksForDisplay());
+ Vector<String> result = idProv.getLinksForDisplay();
+ assertEquals(displayLinks1.size(), result.size());
+ assertTrue(displayLinks1.containsAll(result));
//set default url then reset url links, default should be unset if not present
String[] moreids = { "MIR:00000005", "MIR:00000011" };
names = new Vector<String>(Arrays.asList(moreids));
idProv.setDefaultUrl("MIR:00000372");
idProv.setUrlLinks(names, urls);
- assertEquals(names, idProv.getLinksForDisplay());
+ result = idProv.getLinksForDisplay();
+ assertEquals(displayLinks2.size(), result.size());
+ assertTrue(displayLinks2.containsAll(result));
assertEquals(null, idProv.getDefaultUrl());
}