JAL-2599 fix issue where parser exported map annotation incorrectly

[jalview.git] / test / jalview / util / HMMProbabilityDistributionAnalyserTest.java

diff --git a/test/jalview/util/HMMProbabilityDistributionAnalyserTest.java b/test/jalview/util/HMMProbabilityDistributionAnalyserTest.java
index 815ea66..3e775cc 100644 (file)
--- a/test/jalview/util/HMMProbabilityDistributionAnalyserTest.java
+++ b/test/jalview/util/HMMProbabilityDistributionAnalyserTest.java
@@ -7,8 +7,6 @@ import jalview.datamodel.HMMNode;
 import jalview.datamodel.HiddenMarkovModel;
 import jalview.datamodel.Sequence;
 import jalview.datamodel.SequenceI;
-import jalview.io.DataSourceType;
-import jalview.io.FileParse;
 
 import java.io.BufferedReader;
 import java.io.FileReader;
@@ -103,10 +101,8 @@ public class HMMProbabilityDistributionAnalyserTest {
             "test/jalview/util/test_Fams_for_probability_analysis"));
     BufferedReader brHMM = new BufferedReader(new FileReader(
             "test/jalview/util/test_HMMs_for_probability_analysis"));
-    FileParse parserFam = new FileParse(brFam, "", DataSourceType.FILE);
-    FileParse parserHMM = new FileParse(brHMM, "", DataSourceType.FILE);
-    analyser.readStockholm(parserFam);
-    analyser.readHMM(parserHMM);
+    analyser.readStockholm(brFam);
+    analyser.readHMM(brHMM);
     analyser.processData(6);
     Map<String, Double> map = analyser.binned;
     List<ArrayList<Double>> list = analyser.raw;