+/*
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Copyright (C) 2015 The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
package jalview.util;
import static org.testng.AssertJUnit.assertEquals;
import static org.testng.AssertJUnit.assertNull;
-import org.testng.annotations.Test;
+
import java.util.Arrays;
import java.util.List;
+import org.testng.annotations.Test;
+
public class ShiftListTest
{
- @Test
+ @Test(groups = { "Functional" })
public void testParseMap()
{
assertNull(ShiftList.parseMap(null));
- assertNull(ShiftList.parseMap(new int[]
- {}));
-
+ assertNull(ShiftList.parseMap(new int[] {}));
+
/*
* Gap map showing residues in aligned positions 2,3,6,8,9,10,12
*/
- int[] gm = new int[]
- { 2, 3, 6, 8, 9, 10, 12 };
+ int[] gm = new int[] { 2, 3, 6, 8, 9, 10, 12 };
List<int[]> shifts = ShiftList.parseMap(gm).getShifts();
assertEquals(4, shifts.size());