JAL-1919 updated PDBSequenceFetcherTest and JMol parser config settings to enable...

[jalview.git] / test / jalview / ws / PDBSequenceFetcherTest.java

diff --git a/test/jalview/ws/PDBSequenceFetcherTest.java b/test/jalview/ws/PDBSequenceFetcherTest.java
index b560f01..27d2643 100644 (file)
--- a/test/jalview/ws/PDBSequenceFetcherTest.java
+++ b/test/jalview/ws/PDBSequenceFetcherTest.java
@@ -25,6 +25,7 @@ import static org.testng.AssertJUnit.assertTrue;
 import jalview.bin.Cache;
 import jalview.datamodel.AlignmentI;
 import jalview.datamodel.SequenceI;
+import jalview.structure.StructureViewSettings;
 import jalview.ws.seqfetcher.DbSourceProxy;
 
 import java.util.List;
@@ -60,6 +61,10 @@ public class PDBSequenceFetcherTest
   @Test(groups = { "Network" }, enabled = true)
   public void testRnaSeqRetrieve() throws Exception
   {
+    Cache.applicationProperties.setProperty("STRUCT_FROM_PDB",
+            Boolean.TRUE.toString());
+    Cache.applicationProperties.setProperty("DEFAULT_STRUCTURE_FORMAT",
+            "PDB");
     List<DbSourceProxy> sps = sf.getSourceProxy("PDB");
     AlignmentI response = sps.get(0).getSequenceRecords("2GIS");
     assertTrue(response != null);
@@ -81,6 +86,8 @@ public class PDBSequenceFetcherTest
   {
     Cache.applicationProperties.setProperty("STRUCT_FROM_PDB",
             Boolean.TRUE.toString());
+    StructureViewSettings.setCurrentDefaultFormat("PDB");
+
     testRetrieveProteinSeqFromPDB();
   }
 
@@ -88,7 +95,8 @@ public class PDBSequenceFetcherTest
   public void testmmCifSeqRetrieve() throws Exception
   {
     Cache.applicationProperties.setProperty("STRUCT_FROM_PDB",
-            Boolean.FALSE.toString());
+            Boolean.TRUE.toString());
+    StructureViewSettings.setCurrentDefaultFormat("mmCIF");
     testRetrieveProteinSeqFromPDB();
   }