JAL-1645 update TOC for 2.9 what’s new

[jalview.git] / test / jalview / ws / PDBSequenceFetcherTest.java

diff --git a/test/jalview/ws/PDBSequenceFetcherTest.java b/test/jalview/ws/PDBSequenceFetcherTest.java
index e54d5b9..adf53f5 100644 (file)
--- a/test/jalview/ws/PDBSequenceFetcherTest.java
+++ b/test/jalview/ws/PDBSequenceFetcherTest.java
@@ -37,7 +37,7 @@ public class PDBSequenceFetcherTest
 
   SequenceFetcher sf;
 
-  @BeforeMethod
+ @BeforeMethod(alwaysRun = true)
   public void setUp() throws Exception
   {
     // ensure 'add annotation from structure' is selected
@@ -49,8 +49,16 @@ public class PDBSequenceFetcherTest
     sf = new SequenceFetcher(false);
   }
 
+  /**
+   * Test that RNA structure can be added by a call to the RNAML service.
+   * 
+   * Note this test depends on http://arn-ibmc.in2p3.fr/api/compute/2d which is
+   * not always reliable.
+   * 
+   * @throws Exception
+   */
   @Test(groups =
-  { "Functional" }, enabled = false)
+  { "Network" }, enabled = true)
   public void testRnaSeqRetrieve() throws Exception
   {
     List<DbSourceProxy> sps = sf.getSourceProxy("PDB");
@@ -61,8 +69,10 @@ public class PDBSequenceFetcherTest
     {
       assertTrue("No annotation transfered to sequence.",
               sq.getAnnotation().length > 0);
-      assertTrue("No PDBEntry on sequence.", sq.getPDBId().size() > 0);
-      assertTrue("No RNA annotation on sequence.", sq.getRNA() != null);
+      assertTrue("No PDBEntry on sequence.", sq.getAllPDBEntries().size() > 0);
+      assertTrue(
+              "No RNA annotation on sequence, possibly http://arn-ibmc.in2p3.fr/api/compute/2d not available?",
+              sq.getRNA() != null);
     }
   }