@Test(groups = { "External" })
public void testPfamFullAndSeed() throws Exception
{
- PfamFull pff = new PfamFull();
+ Pfam pff = new PfamFull();
PfamSeed pfseed = new PfamSeed();
AlignmentI fullpf = pff.getSequenceRecords(pff.getTestQuery());
Assert.assertNotNull(fullpf, "Full Alignment for " + pff.getTestQuery()
+ " didn't retrieve.");
- Assert.assertTrue(fullpf.getHeight() > 1,
- "Full Alignment for " + pff.getTestQuery()
- + " didn't have more than one sequence.");
+ Assert.assertTrue(fullpf.getHeight() > 1, "Full Alignment for "
+ + pff.getTestQuery() + " didn't have more than one sequence.");
AlignmentI seedpf = pfseed.getSequenceRecords(pff.getTestQuery());
Assert.assertNotNull(seedpf, "Seed Alignment for " + pff.getTestQuery()
+ " didn't retrieve.");