JAL-1628 drop getShowAnnotation accessor in favour of isShowAnnotation in AlignViewpo...
[jalview.git] / test / jalview / ws / jabaws / JpredJabaStructExportImport.java
index f0b8f99..1e920e0 100644 (file)
@@ -186,9 +186,8 @@ public class JpredJabaStructExportImport
       String aligfileout = new FormatAdapter().formatSequences("PFAM",
               al.getSequencesArray());
 
-      String anfileout = new AnnotationFile().printAnnotations(
-              al.getAlignmentAnnotation(), al.getGroups(),
-              al.getProperties());
+      String anfileout = new AnnotationFile()
+              .printAnnotationsForAlignment(al);
       assertTrue(
               "Test "
                       + testname