import jalview.io.FormatAdapter;
import jalview.io.StockholmFileTest;
import jalview.project.Jalview2XML;
-import jalview.ws.jws2.AbstractJabaCalcWorker;
+import jalview.ws.api.ServiceWithParameters;
import jalview.ws.jws2.JabaParamStore;
import jalview.ws.jws2.Jws2Discoverer;
+import jalview.ws.jws2.SeqAnnotationServiceCalcWorker;
import jalview.ws.jws2.SequenceAnnotationWSClient;
import jalview.ws.jws2.jabaws2.Jws2Instance;
import jalview.ws.params.AutoCalcSetting;
public static Jws2Instance rnaalifoldws;
- AbstractJabaCalcWorker alifoldClient;
+ SeqAnnotationServiceCalcWorker alifoldClient;
public static jalview.gui.AlignFrame af = null;
Thread.sleep(100);
}
- for (Jws2Instance svc : disc.getServices())
+ for (ServiceWithParameters svc : disc.getServices())
{
if (svc.getNameURI().toLowerCase().contains("rnaalifoldws"))
{
- rnaalifoldws = svc;
+ rnaalifoldws = (Jws2Instance) svc;
}
}
public void testRNAAliFoldValidStructure()
{
- alifoldClient = new AbstractJabaCalcWorker(rnaalifoldws, af, null,
+ alifoldClient = new SeqAnnotationServiceCalcWorker(rnaalifoldws, af, null,
null);
af.getViewport().getCalcManager().startWorker(alifoldClient);
public void testRNAStructExport()
{
- alifoldClient = new AbstractJabaCalcWorker(rnaalifoldws, af, null,
+ alifoldClient = new SeqAnnotationServiceCalcWorker(rnaalifoldws, af, null,
null);
af.getViewport().getCalcManager().startWorker(alifoldClient);
opts.add(rg);
}
}
- alifoldClient = new AbstractJabaCalcWorker(rnaalifoldws, af, null,
+ alifoldClient = new SeqAnnotationServiceCalcWorker(rnaalifoldws, af, null,
JabaParamStore.getJwsArgsfromJaba(opts));
af.getViewport().getCalcManager().startWorker(alifoldClient);