import static org.testng.AssertJUnit.assertNotNull;
import static org.testng.AssertJUnit.assertTrue;
+import jalview.datamodel.AlignmentAnnotation;
+import jalview.datamodel.AlignmentI;
+import jalview.gui.Jalview2XML;
+import jalview.io.AnnotationFile;
+import jalview.io.FormatAdapter;
+import jalview.io.StockholmFileTest;
+import jalview.ws.jws2.Jws2Discoverer;
+import jalview.ws.jws2.RNAalifoldClient;
+import jalview.ws.jws2.SequenceAnnotationWSClient;
+import jalview.ws.jws2.jabaws2.Jws2Instance;
+import jalview.ws.params.AutoCalcSetting;
+
import java.awt.Component;
import java.util.ArrayList;
import java.util.List;
import compbio.metadata.WrongParameterException;
-import jalview.datamodel.AlignmentAnnotation;
-import jalview.datamodel.AlignmentI;
-import jalview.gui.Jalview2XML;
-import jalview.io.AnnotationFile;
-import jalview.io.FormatAdapter;
-import jalview.io.StockholmFileTest;
-import jalview.ws.jws2.Jws2Discoverer;
-import jalview.ws.jws2.RNAalifoldClient;
-import jalview.ws.jws2.SequenceAnnotationWSClient;
-import jalview.ws.jws2.jabaws2.Jws2Instance;
-import jalview.ws.params.AutoCalcSetting;
-
public class RNAStructExportImport
{
public static String testseqs = "examples/RF00031_folded.stk";
public static jalview.gui.AlignFrame af = null;
- @BeforeClass
+ @BeforeClass(alwaysRun = true)
public static void setUpBeforeClass() throws Exception
{
}
}
- @Test
+ @Test(groups = { "Functional" })
public void testRNAAliFoldValidStructure()
{
} while (af.getViewport().getCalcManager().isWorking());
AlignmentI orig_alig = af.getViewport().getAlignment();
- for (AlignmentAnnotation aa:orig_alig.getAlignmentAnnotation())
+ for (AlignmentAnnotation aa : orig_alig.getAlignmentAnnotation())
{
if (alifoldClient.involves(aa))
{
}
}
- @Test
+ @Test(groups = { "Functional" })
public void testRNAStructExport()
{
+ "\nCouldn't complete Annotation file roundtrip input/output/input test.");
}
- @Test
+ @Test(groups = { "Functional" })
public void testRnaalifoldSettingsRecovery()
{
List<compbio.metadata.Argument> opts = new ArrayList<compbio.metadata.Argument>();