JAL-2344 FileFormats singleton for formats, FileFormatI simplified

[jalview.git] / test / jalview / ws / jabaws / RNAStructExportImport.java

diff --git a/test/jalview/ws/jabaws/RNAStructExportImport.java b/test/jalview/ws/jabaws/RNAStructExportImport.java
index dc8d0e4..f1430f6 100644 (file)
--- a/test/jalview/ws/jabaws/RNAStructExportImport.java
+++ b/test/jalview/ws/jabaws/RNAStructExportImport.java
@@ -27,6 +27,7 @@ import jalview.bin.Cache;
 import jalview.datamodel.AlignmentAnnotation;
 import jalview.datamodel.AlignmentI;
 import jalview.gui.Jalview2XML;
+import jalview.gui.JvOptionPane;
 import jalview.io.AnnotationFile;
 import jalview.io.DataSourceType;
 import jalview.io.FileFormat;
@@ -56,6 +57,14 @@ import compbio.metadata.WrongParameterException;
 
 public class RNAStructExportImport
 {
+
+  @BeforeClass(alwaysRun = true)
+  public void setUpJvOptionPane()
+  {
+    JvOptionPane.setInteractiveMode(false);
+    JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION);
+  }
+
   private static final String JAR_FILE_NAME = "testRnalifold_param.jar";
 
   public static String testseqs = "examples/RF00031_folded.stk";
@@ -192,7 +201,7 @@ public class RNAStructExportImport
     try
     {
       // what format would be appropriate for RNAalifold annotations?
-      String aligfileout = FileFormat.Pfam.getAlignmentFile().print(
+      String aligfileout = FileFormat.Pfam.getWriter(null).print(
               al.getSequencesArray(), true);
 
       String anfileout = new AnnotationFile()