FeatureProperties.isCodingFeature(embl.getDbSource(),
sfs[0].getType()));
assertEquals(embl.getDbSource(), sfs[0].getFeatureGroup());
- DBRefEntry[] dr = DBRefUtils.selectRefs(seq.getDBRef(),
+ DBRefEntry[] dr = DBRefUtils.selectRefs(seq.getDBRefs(),
new String[] { DBRefSource.UNIPROT, DBRefSource.UNIPROTKB,
DBRefSource.EMBLCDSProduct, DBRefSource.ENSEMBL });
assertNotNull(dr);
assertEquals("Expected local reference map to be 3 nucleotides", dr[0]
.getMap().getWidth(), 3);
AlignmentI sprods = CrossRef.findXrefSequences(
- alsq.getSequencesArray(), true, dr[0].getSource(),
- alsq.getDataset());
+ alsq.getSequencesArray(), true, dr[0].getSource(), alsq);
assertNotNull(
"Couldn't recover cross reference sequence from dataset. Was it ever added ?",
sprods);