SiftsSettings.setCacheThresholdInDays("2");
SiftsSettings.setFailSafePIDThreshold("70");
PDBfile pdbFile;
-
+
pdbFile = new PDBfile(false, false, false,
"test/jalview/io/" + testPDBId + ".pdb", DataSourceType.FILE);
- // TODO: this uses a network connection - we should mock the sifts testPDBId.xml.gz
+ // TODO: this uses a network connection - we should mock the sifts
+ // testPDBId.xml.gz
siftsClient = new SiftsClient(pdbFile);
}
{
siftsClient = null;
}
-
- @Test(groups= {"Functional"})
- public void testSIFTsDownloadURL() {
+
+ @Test(groups = { "Functional" })
+ public void testSIFTsDownloadURL()
+ {
String expectedUrl = "https://ftp.ebi.ac.uk/pub/databases/msd/sifts/split_xml/xy/1xyz.sifts.xml.gz";
- Assert.assertEquals(SiftsClient.getDownloadUrlFor("1xyz.sifts.xml.gz"), expectedUrl);
+ Assert.assertEquals(SiftsClient.getDownloadUrlFor("1xyz.sifts.xml.gz"),
+ expectedUrl);
}
@Test(groups = { "Network" })
{
SequenceI invalidTestSeq = new Sequence("testSeq", "ABCDEFGH");
DBRefEntry invalidDBRef = new DBRefEntry();
- invalidDBRef.setAccessionId("BLAR"); // note no version is set, so also invalid
+ invalidDBRef.setAccessionId("BLAR"); // note no version is set, so also
+ // invalid
invalidTestSeq.addDBRef(invalidDBRef);
siftsClient.getValidSourceDBRef(invalidTestSeq);
}