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JAL-1759 merge from develop
[jalview.git] / utils / InstallAnywhere / Jalview.iap_xml
diff --git a/utils/InstallAnywhere/Jalview.iap_xml b/utils/InstallAnywhere/Jalview.iap_xml
index 95ccfe5..14b372f 100755 (executable)
--- a/utils/InstallAnywhere/Jalview.iap_xml
+++ b/utils/InstallAnywhere/Jalview.iap_xml
@@ -1,8 +1,8 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <!-- This script was automatically generated using InstallAnywhere 2014 Professional, Build 4783
      STATUS: Fully Functional LICENSED Edition
-     DATE:   Mon Dec 01 23:27:13 GMT 2014 -->
-<InstallAnywhere_Deployment_Project increments="5258">
+     DATE:   Tue Dec 02 16:16:02 GMT 2014 -->
+<InstallAnywhere_Deployment_Project increments="5299">
        <!-- ** DO NOT EDIT ** Essential authorization and configuration data ** DO NOT EDIT ** -->
        <essentialScriptInfo>
                <versionID major="16" minor="0" revision="0"/>
@@ -10,9 +10,9 @@
                <scriptID>12,42,11,85,78,76,73,67,69,78,83,69,68</scriptID>
                <buildID>3,13,71,76,105,110,117,120,44,32,50,46,54,46,51,50,45,51,53,56,46,54,46,50,46,101,108,54,46,120,56,54,95,54,52,44,32,97,109,100,54,52,59,32,74,97,118,97,32,49,46,55,46,48,95,54,48,44,32,79,114,97,99,108,101,32,67,111,114,112,111,114,97,116,105,111,110,44,32,104,116,116,112,58,47,47,106,97,118,97,46,111,114,97,99,108,101,46,99,111,109,47,59,32,101,110,44,32,85,110,107,110,111,119,110,59,32,73,83,79,45,56,56,53,57,45,49</buildID>
                <!-- The authorizationID may change between project saves and builds.  This does not effect the integrity of the project, nor do changes in this value represent changes in the actual InstallAnywhere project. -->
-               <authorizationID>1,0,0,64,13,34,-32,-128,80,127,118,101,93,105,116,96,121,48,48,49,56,52,67,98,113,112,112,37,82,101,96,63,55,-11,2,6,5,109,24,10,1,0,0</authorizationID>
+               <authorizationID>1,0,0,64,13,-64,-128,0,80,127,118,101,93,105,116,96,121,48,48,49,56,52,67,98,113,112,112,37,82,101,96,63,55,-11,2,9,1,105,27,10,1,0,0</authorizationID>
        </essentialScriptInfo>
-       <installationObjects uniqueObjects="224">
+       <installationObjects uniqueObjects="225">
                <object class="com.zerog.ia.installer.Installer" objectID="fe7d63eda660">
                        <property name="belongsToUninstallPhase">
                                <boolean>false</boolean>
@@ -223,28 +223,28 @@ it will search for ones in this list]]></string>
                                                                </object>
                                                        </method>
                                                        <method name="addElement">
-                                                               <object class="com.zerog.ia.installer.util.LAXPropertyData" objectID="97f991ffa6f7">
+                                                               <object class="com.zerog.ia.installer.util.LAXPropertyData" objectID="bbb5f73fa453">
                                                                        <property name="propertyValue">
-                                                                               <string><![CDATA[33554432]]></string>
+                                                                               <string><![CDATA[jalview.bin.Jalview]]></string>
                                                                        </property>
                                                                        <property name="propertyName">
-                                                                               <string><![CDATA[lax.nl.java.option.java.heap.size.initial]]></string>
+                                                                               <string><![CDATA[lax.main.class]]></string>
                                                                        </property>
                                                                        <property name="propertyComment">
-                                                                               <string><![CDATA[Initial heap size for Jalview]]></string>
+                                                                               <string><![CDATA[the class that contains the main method for the application]]></string>
                                                                        </property>
                                                                </object>
                                                        </method>
                                                        <method name="addElement">
-                                                               <object class="com.zerog.ia.installer.util.LAXPropertyData" objectID="bbb5f73fa453">
+                                                               <object class="com.zerog.ia.installer.util.LAXPropertyData" objectID="97f991ffa6f7">
                                                                        <property name="propertyValue">
-                                                                               <string><![CDATA[jalview.bin.Jalview]]></string>
+                                                                               <string><![CDATA[33554432]]></string>
                                                                        </property>
                                                                        <property name="propertyName">
-                                                                               <string><![CDATA[lax.main.class]]></string>
+                                                                               <string><![CDATA[lax.nl.java.option.java.heap.size.initial]]></string>
                                                                        </property>
                                                                        <property name="propertyComment">
-                                                                               <string><![CDATA[the class that contains the main method for the application]]></string>
+                                                                               <string><![CDATA[Initial heap size for Jalview]]></string>
                                                                        </property>
                                                                </object>
                                                        </method>
@@ -1040,6 +1040,58 @@ and any path to a file to save to the file]]></string>
                                                        <property name="ruleExpression">
                                                                <string><![CDATA[]]></string>
                                                        </property>
+                                               </object>                               
+                                       </method>               
+                                       <method name="addElement">
+                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="244fff00ffff">
+                                                       <property name="belongsToUninstallPhase">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledCancel">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledError">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="ruleExpression">
+                                                               <string><![CDATA[]]></string>
+                                                       </property>
+                                                       <property name="unixPermissions">
+                                                               <string><![CDATA[664]]></string>
+                                                       </property>
+                                                       <property name="sourceName">
+                                                               <string><![CDATA[jsoup-1.8.1.jar]]></string>
+                                                       </property>
+                                                       <property name="overrideUnixPermissions">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="sourcePath">
+                                                               <string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+                                                       </property>
+                                                       <property name="shouldUninstall">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledCancel">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledError">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="destinationName">
+                                                               <string><![CDATA[jsoup-1.8.1.jar]]></string>
+                                                       </property>
+                                                       <property name="fileSize">
+                                                               <long>348699</long>
+                                                       </property>
+                                                       <property name="macBinary">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="targetCheckKind">
+                                                               <int>0</int>
+                                                       </property>
+                                                       <property name="ruleExpression">
+                                                               <string><![CDATA[]]></string>
+                                                       </property>
                                                </object>
                                        </method>
                                        <method name="addElement">
@@ -1164,7 +1216,7 @@ and any path to a file to save to the file]]></string>
                                                                <string><![CDATA[664]]></string>
                                                        </property>
                                                        <property name="sourceName">
-                                                               <string><![CDATA[Jmol-12.2.4.jar]]></string>
+                                                               <string><![CDATA[Jmol-14.2.14_2015.06.11.jar]]></string>
                                                        </property>
                                                        <property name="overrideUnixPermissions">
                                                                <boolean>false</boolean>
@@ -1182,7 +1234,7 @@ and any path to a file to save to the file]]></string>
                                                                <boolean>true</boolean>
                                                        </property>
                                                        <property name="destinationName">
-                                                               <string><![CDATA[Jmol-12.2.4.jar]]></string>
+                                                               <string><![CDATA[Jmol-14.2.14_2015.06.11.jar]]></string>
                                                        </property>
                                                        <property name="fileSize">
                                                                <long>4938027</long>
@@ -1788,7 +1840,7 @@ and any path to a file to save to the file]]></string>
                                                                <string><![CDATA[664]]></string>
                                                        </property>
                                                        <property name="sourceName">
-                                                               <string><![CDATA[VARNAv3-91.jar]]></string>
+                                                               <string><![CDATA[VARNAv3-93.jar]]></string>
                                                        </property>
                                                        <property name="overrideUnixPermissions">
                                                                <boolean>false</boolean>
@@ -1806,7 +1858,7 @@ and any path to a file to save to the file]]></string>
                                                                <boolean>true</boolean>
                                                        </property>
                                                        <property name="destinationName">
-                                                               <string><![CDATA[VARNAv3-91.jar]]></string>
+                                                               <string><![CDATA[VARNAv3-93.jar]]></string>
                                                        </property>
                                                        <property name="fileSize">
                                                                <long>663408</long>
@@ -2069,7 +2121,7 @@ and any path to a file to save to the file]]></string>
                                                                <string><![CDATA[jfreesvg-2.1.jar]]></string>
                                                        </property>
                                                        <property name="fileSize">
-                                                               <long>382442</long>
+                                                               <long>49768</long>
                                                        </property>
                                                        <property name="macBinary">
                                                                <boolean>false</boolean>
@@ -2100,7 +2152,7 @@ and any path to a file to save to the file]]></string>
                                                                <string><![CDATA[664]]></string>
                                                        </property>
                                                        <property name="sourceName">
-                                                               <string><![CDATA[json-simple-1.1.jar]]></string>
+                                                               <string><![CDATA[json_simple-1.1.jar]]></string>
                                                        </property>
                                                        <property name="overrideUnixPermissions">
                                                                <boolean>false</boolean>
@@ -2118,10 +2170,166 @@ and any path to a file to save to the file]]></string>
                                                                <boolean>true</boolean>
                                                        </property>
                                                        <property name="destinationName">
-                                                               <string><![CDATA[json-simple-1.1.jar]]></string>
+                                                               <string><![CDATA[json_simple-1.1.jar]]></string>
                                                        </property>
                                                        <property name="fileSize">
-                                                               <long>382442</long>
+                                                               <long>16046</long>
+                                                       </property>
+                                                       <property name="macBinary">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="targetCheckKind">
+                                                               <int>0</int>
+                                                       </property>
+                                                       <property name="ruleExpression">
+                                                               <string><![CDATA[]]></string>
+                                                       </property>
+                                               </object>
+                                       </method>
+                                       <method name="addElement">
+                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="841f46efeefab93">
+                                                       <property name="belongsToUninstallPhase">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledCancel">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledError">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="ruleExpression">
+                                                               <string><![CDATA[]]></string>
+                                                       </property>
+                                                       <property name="unixPermissions">
+                                                               <string><![CDATA[664]]></string>
+                                                       </property>
+                                                       <property name="sourceName">
+                                                               <string><![CDATA[libqaqua64.jnilib]]></string>
+                                                       </property>
+                                                       <property name="overrideUnixPermissions">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="sourcePath">
+                                                               <string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+                                                       </property>
+                                                       <property name="shouldUninstall">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledCancel">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledError">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="destinationName">
+                                                               <string><![CDATA[libqaqua64.jnilib]]></string>
+                                                       </property>
+                                                       <property name="fileSize">
+                                                               <long>16046</long>
+                                                       </property>
+                                                       <property name="macBinary">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="targetCheckKind">
+                                                               <int>0</int>
+                                                       </property>
+                                                       <property name="ruleExpression">
+                                                               <string><![CDATA[]]></string>
+                                                       </property>
+                                               </object>
+                                       </method>
+                                       <method name="addElement">
+                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="9a1f46efeefab93">
+                                                       <property name="belongsToUninstallPhase">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledCancel">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledError">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="ruleExpression">
+                                                               <string><![CDATA[]]></string>
+                                                       </property>
+                                                       <property name="unixPermissions">
+                                                               <string><![CDATA[664]]></string>
+                                                       </property>
+                                                       <property name="sourceName">
+                                                               <string><![CDATA[libquaqua.jnilib]]></string>
+                                                       </property>
+                                                       <property name="overrideUnixPermissions">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="sourcePath">
+                                                               <string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+                                                       </property>
+                                                       <property name="shouldUninstall">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledCancel">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledError">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="destinationName">
+                                                               <string><![CDATA[libquaqua.jnilib]]></string>
+                                                       </property>
+                                                       <property name="fileSize">
+                                                               <long>16046</long>
+                                                       </property>
+                                                       <property name="macBinary">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="targetCheckKind">
+                                                               <int>0</int>
+                                                       </property>
+                                                       <property name="ruleExpression">
+                                                               <string><![CDATA[]]></string>
+                                                       </property>
+                                               </object>
+                                       </method>
+                                       <method name="addElement">
+                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="1936efeefab93">
+                                                       <property name="belongsToUninstallPhase">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledCancel">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledError">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="ruleExpression">
+                                                               <string><![CDATA[]]></string>
+                                                       </property>
+                                                       <property name="unixPermissions">
+                                                               <string><![CDATA[664]]></string>
+                                                       </property>
+                                                       <property name="sourceName">
+                                                               <string><![CDATA[quaqua-filechooser-only-8.0.jar]]></string>
+                                                       </property>
+                                                       <property name="overrideUnixPermissions">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="sourcePath">
+                                                               <string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+                                                       </property>
+                                                       <property name="shouldUninstall">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledCancel">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledError">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="destinationName">
+                                                               <string><![CDATA[quaqua-filechooser-only-8.0.jar]]></string>
+                                                       </property>
+                                                       <property name="fileSize">
+                                                               <long>16046</long>
                                                        </property>
                                                        <property name="macBinary">
                                                                <boolean>false</boolean>
@@ -2946,7 +3154,10 @@ Press "Done" to quit the installer.]]></string>
                                                                                                <boolean>true</boolean>
                                                                                        </property>
                                                                                        <property name="buildWithVM">
-                                                                                               <boolean>false</boolean>
+                                                                                               <boolean>true</boolean>
+                                                                                       </property>
+                                                                                       <property name="bundledVM">
+                                                                                               <string><![CDATA[OracleJRE8u5_Macosx.vm]]></string>
                                                                                        </property>
                                                                                        <property name="withoutVmSearchOption">
                                                                                                <short>10</short>
@@ -2983,7 +3194,7 @@ Press "Done" to quit the installer.]]></string>
                                                                                                <boolean>true</boolean>
                                                                                        </property>
                                                                                        <property name="bundledVM">
-                                                                                               <string><![CDATA[SunJRE160_01iWin32.vm]]></string>
+                                                                                               <string><![CDATA[SunJRE170_03Win32.vm]]></string>
                                                                                        </property>
                                                                                        <property name="withoutVmSearchOption">
                                                                                                <short>10</short>
@@ -3017,7 +3228,7 @@ Press "Done" to quit the installer.]]></string>
                                                                                                <boolean>true</boolean>
                                                                                        </property>
                                                                                        <property name="buildWithVM">
-                                                                                               <boolean>true</boolean>
+                                                                                               <boolean>false</boolean>
                                                                                        </property>
                                                                                        <property name="bundledVM">
                                                                                                <string><![CDATA[IBMJRE142AIX_ca1420-20040626.vm]]></string>
@@ -3094,13 +3305,13 @@ Press "Done" to quit the installer.]]></string>
                                                                                                <boolean>true</boolean>
                                                                                        </property>
                                                                                        <property name="bundledVM">
-                                                                                               <string><![CDATA[SunJRE160_26LinuxINTEL.vm]]></string>
+                                                                                               <string><![CDATA[ORACLEJRE7u60_linux32.vm]]></string>
                                                                                        </property>
                                                                                        <property name="withoutVmSearchOption">
                                                                                                <short>10</short>
                                                                                        </property>
                                                                                        <property name="withVMSearchOption">
-                                                                                               <short>21</short>
+                                                                                               <short>20</short>
                                                                                        </property>
                                                                                        <property name="win32InstallerLauncherType">
                                                                                                <short>90</short>
@@ -3131,7 +3342,7 @@ Press "Done" to quit the installer.]]></string>
                                                                                                <boolean>true</boolean>
                                                                                        </property>
                                                                                        <property name="bundledVM">
-                                                                                               <string><![CDATA[SunJRE160_26SolarisSPARC.vm]]></string>
+                                                                                               <string><![CDATA[OracleJRE8u5_SolarisSparc.vm]]></string>
                                                                                        </property>
                                                                                        <property name="withoutVmSearchOption">
                                                                                                <short>10</short>
@@ -3196,7 +3407,7 @@ Press "Done" to quit the installer.]]></string>
                                                                                                <string><![CDATA[UNIX_with_VM]]></string>
                                                                                        </property>
                                                                                        <property name="buildNoVM">
-                                                                                               <boolean>false</boolean>
+                                                                                               <boolean>true</boolean>
                                                                                        </property>
                                                                                        <property name="buildWithVM">
                                                                                                <boolean>true</boolean>
@@ -3267,16 +3478,19 @@ Press "Done" to quit the installer.]]></string>
                                                                                                <string><![CDATA[Windows_Pure_64_Bit]]></string>
                                                                                        </property>
                                                                                        <property name="buildNoVM">
-                                                                                               <boolean>false</boolean>
+                                                                                               <boolean>true</boolean>
                                                                                        </property>
                                                                                        <property name="buildWithVM">
-                                                                                               <boolean>false</boolean>
+                                                                                               <boolean>true</boolean>
+                                                                                       </property>
+                                                                                       <property name="bundledVM">
+                                                                                               <string><![CDATA[OracleJRE8u5_windows(x64).vm]]></string>
                                                                                        </property>
                                                                                        <property name="withoutVmSearchOption">
                                                                                                <short>10</short>
                                                                                        </property>
                                                                                        <property name="withVMSearchOption">
-                                                                                               <short>21</short>
+                                                                                               <short>20</short>
                                                                                        </property>
                                                                                        <property name="win32InstallerLauncherType">
                                                                                                <short>90</short>
@@ -4245,7 +4459,7 @@ Press "Done" to quit the installer.]]></string>
                                                                <boolean>true</boolean>
                                                        </property>
                                                        <property name="credentialInformation">
-                                                               <object class="com.flexera.ia.vapp.datastructures.VMWareCredentialInformationImpl" objectID="1baf22668814">
+                                                               <object class="com.flexera.ia.vapp.datastructures.VMWareCredentialInformationImpl" objectID="1f4abcab8706">
                                                                        <property name="hostName">
                                                                                <string><![CDATA[]]></string>
                                                                        </property>
@@ -4439,7 +4653,7 @@ Press "Done" to quit the installer.]]></string>
                                        </method>
                                        <method name="put">
                                                <string><![CDATA[com.zerog.ia.project.save.last.date]]></string>
-                                               <string><![CDATA[01 December 2014 23:27:12 o'clock GMT]]></string>
+                                               <string><![CDATA[02 December 2014 16:16:01 o'clock GMT]]></string>
                                        </method>
                                        <method name="put">
                                                <string><![CDATA[com.zerog.ia.build.options.optimization.platform.cdrom]]></string>
@@ -6318,8 +6532,11 @@ and any path to a file to read from that file]]></string>
                                                                                <object refID="24485f8aa671"/>
                                                                                <object refID="24485f89a672"/>
                                                                                <object refID="24485f8aa672"/>
-                                                                               <object refID="244ffffaa672"/>
-                                                                               <object refID="244f00faa672"/>
+
+                                                                               <object refID="244fff00ffff"/>
+                                                           <object refID="244ffffaa672"/>
+                                                           <object refID="244f00faa672"/>
+
                                                                                <object refID="24485f8ba672"/>
                                                                                <object refID="24485f8aa673"/>
                                                                                <object refID="24485f8ba673"/>
@@ -6506,6 +6723,10 @@ and any path to a file to read from that file]]></string>
                                                                                <object refID="f46c2f42ab93"/>
                                                                                <object refID="1f46cffffab93"/>
                                                                                <object refID="1f46efeefab93"/>
+                                                                               <object refID="841f46efeefab93"/>
+                                                                               <object refID="9a1f46efeefab93"/>
+                                                                               <object refID="1936efeefab93"/>
+                                                                               
                                                                                <object class="com.zerog.ia.installer.actions.InstallFile" objectID="f44fc5b2aba1">
                                                                                        <property name="belongsToUninstallPhase">
                                                                                                <boolean>false</boolean>
@@ -7056,8 +7277,9 @@ and any path to a file to read from that file]]></string>
                                                                                                <object refID="24485f8aa671"/>
                                                                                                <object refID="24485f89a672"/>
                                                                                                <object refID="24485f8aa672"/>
-                                                                                               <object refID="244ffffaa672"/>
-                                                                                               <object refID="244f00faa672"/>
+                                                                                               <object refID="244fff00ffff"/>
+                                                                       <object refID="244ffffaa672"/>
+                                                                       <object refID="244f00faa672"/>
                                                                                                <object refID="24485f8ba672"/>
                                                                                                <object refID="24485f8aa673"/>
                                                                                                <object refID="24485f8ba673"/>
@@ -7082,6 +7304,7 @@ and any path to a file to read from that file]]></string>
                                                                                                <object refID="f46c2f42ab93"/>
                                                                                                <object refID="1f46cffffab93"/>
                                                                                                <object refID="1f46efeefab93"/>
+                                                                                               <object refID="1936efeefab93"/>
                                                                                        </visualChildren>
                                                                                </object>
                                                                                <object class="com.zerog.ia.installer.actions.InstallDirectory" objectID="f44fc5d5aba1">