Merge branch 'improvement/JAL-1988+JAL-3416_Java8_macOS_APQHandlers_and_FlatLaF_optio...

[jalview.git] / utils / checkstyle / import-control.xml

diff --git a/utils/checkstyle/import-control.xml b/utils/checkstyle/import-control.xml
index b11b567..478966f 100644 (file)
--- a/utils/checkstyle/import-control.xml
+++ b/utils/checkstyle/import-control.xml
@@ -20,6 +20,7 @@
                <allow pkg="com.stevesoft.pat"/>
                
                <subpackage name="appletgui">
+               <disallow pkg="javax.swing"/>
                <disallow pkg="jalview.gui"/>
                <disallow pkg="jalview.ws"/>
                <allow pkg="org.jmol"/>
@@ -36,13 +37,39 @@
                <subpackage name="datamodel">
                <disallow pkg="jalview.gui"/>
                <allow pkg="fr.orsay.lri.varna"/>
-                       <subpackage name="xdb">
-                               <subpackage name="embl">
-                               <allow pkg="org.exolab.castor"/>
-                           </subpackage>
+                       <subpackage name="xdb.embl">
+                       <allow pkg="org.exolab.castor"/>
                    </subpackage>
            </subpackage>
                
+               <subpackage name="ext">
+                       <subpackage name="ensembl">
+                       <allow pkg="javax.ws"/>
+                       <allow pkg="org.json"/>
+                       </subpackage>
+                       <subpackage name="htsjdk">
+                       <allow pkg="htsjdk"/>
+                       </subpackage>
+                       <subpackage name="jmol">
+                       <allow pkg="MCview"/>
+                       <allow pkg="org.jmol"/>
+                       </subpackage>
+                       <subpackage name="paradise">
+                       <allow pkg="org.apache"/>
+                       <allow pkg="org.json"/>
+                       </subpackage>
+                       <subpackage name="rbvi">
+                       <allow pkg="ext.edu.ucsf"/>
+                       <allow pkg="javax.servlet"/>
+                       </subpackage>
+                       <subpackage name="so">
+                       <allow pkg="org.biojava"/>
+                       </subpackage>
+                       <subpackage name="varna">
+                       <allow pkg="fr.orsay"/>
+                       </subpackage>
+           </subpackage>
+               
                <subpackage name="fts">
                <allow pkg="javax.swing"/>
                <allow pkg="javax.ws"/>
@@ -67,6 +94,7 @@
                <allow pkg="compbio.metadata" class="jalview.gui.WsJobParameters"/>
                <allow pkg="fr.orsay.lri.varna" class="jalview.gui.AppVarna"/>
                <allow pkg="fr.orsay.lri.varna" class="jalview.gui.AppVarnaBinding"/>
+               <allow pkg="org.stackoverflowusers.file" class="jalview.gui.Desktop"/>
                <allow pkg="uk.ac.vamsas" class="jalview.gui.VamsasApplication"/>
            </subpackage>
                
@@ -89,6 +117,9 @@
                <allow pkg="uk.ac.vamsas"/>
                <allow pkg="fr.orsay.lri.varna"/>
                <allow pkg="MCview"/>
+                       <subpackage name="vcf">
+                       <allow pkg="htsjdk\.*" regex="true"/>
+                       </subpackage>       
                </subpackage>       
                                
                <subpackage name="javascript">
@@ -99,9 +130,18 @@
                <allow pkg="javax.servlet"/>
                </subpackage>
 
+               <subpackage name="schemes">
+                       <allow pkg="org.exolab.castor" class="jalview.schemes.ColourSchemeLoader"/>
+               </subpackage>
+
                <subpackage name="structure">
                <allow pkg="MCview"/>
                </subpackage>
+               
+               <subpackage name="urls">
+                       <allow pkg="javax.swing" class="jalview.urls.UrlLinkTableModel"/>
+                       <allow pkg="org.json"/>
+               </subpackage>
 
                <subpackage name="util">
                <allow pkg="javax.swing"/>