<allow pkg="compbio.metadata" class="jalview.gui.WsJobParameters"/>
<allow pkg="fr.orsay.lri.varna" class="jalview.gui.AppVarna"/>
<allow pkg="fr.orsay.lri.varna" class="jalview.gui.AppVarnaBinding"/>
+ <allow pkg="org.stackoverflowusers.file" class="jalview.gui.Desktop"/>
<allow pkg="uk.ac.vamsas" class="jalview.gui.VamsasApplication"/>
</subpackage>
<allow pkg="uk.ac.vamsas"/>
<allow pkg="fr.orsay.lri.varna"/>
<allow pkg="MCview"/>
+ <subpackage name="vcf">
+ <allow pkg="htsjdk\.*" regex="true"/>
+ </subpackage>
</subpackage>
<subpackage name="javascript">