JAL-4034 Allow request for non-modal JDialog, which puts the Runnable action into...

[jalview.git] / utils / install4j / auto_file_associations-i4j8.pl

diff --git a/utils/install4j/auto_file_associations-i4j8.pl b/utils/install4j/auto_file_associations-i4j8.pl
index c8299f6..31a4afa 100755 (executable)
--- a/utils/install4j/auto_file_associations-i4j8.pl
+++ b/utils/install4j/auto_file_associations-i4j8.pl
@@ -23,7 +23,7 @@ my $mimetypes = {
   scorematrix => "application/x-jalview-scorematrix+text",
   pdb => "chemical/x-pdb",
   mmcif => "chemical/x-cif",
-  mmcif2 => "chemical/x-mcif",
+  mmcif2 => "chemical/x-mmcif",
   jalview => "application/x-jalview+xml+zip",
   jvl => "application/x-jalview-jvl+text",
   annotations => "application/x-jalview-annotations+text",
@@ -37,8 +37,9 @@ my $add_associations = {
   gff3 => {shortname=>"gff3",name=>"Generic Features Format v3",extensions=>["gff3"]},
   features => {shortname=>"features",name=>"Jalview Features",extensions=>["features","jvfeatures"]},
   annotations => {shortname=>"annotations",name=>"Jalview Annotations",extensions=>["annotations","jvannotations"]},
+  mmcif => {shortname=>"mmcif",name=>"CIF",extensions=>["cif"]},
   mmcif2 => {shortname=>"mmcif2",name=>"mmCIF",extensions=>["mcif","mmcif"]},
-  jvl => {shortname=>"jvl",name=>"Jalview Version Locator",extensions=>["jvl"],iconfile=>"Jalview-Version-Locator"},
+  jvl => {shortname=>"jvl",name=>"Jalview Launch",extensions=>["jvl"],iconfile=>"jvl_file"},
   jnet => {shortname=>"jnet",name=>"JnetFile",extensions=>["concise","jnet"]},
   scorematrix => {shortname=>"scorematrix",name=>"Substitution Matrix",extensions=>["mat"]},
 };
@@ -47,19 +48,41 @@ my $add_extensions = {
 };
 my @put_first = qw(jalview jvl);
 
+my @non_primary = qw(mmcif mmcif2 pdb);
+
 my $v = ($i4jversion >= 8)?$i4jversion:"";
 my $i4jtemplatefile = "file_associations_template-install4j${v}.xml";
 my $i4jtemplate;
-open(IT,"<$i4jtemplatefile") or dir("Could not open '$i4jtemplatefile' for reading");
+my $mactemplatefile = "file_associations_template-Info_plist.xml";
+my $mactemplate;
+
+open(MT,"<$mactemplatefile") or die("Could not open '$mactemplatefile' for reading");
+while(<MT>){
+  $mactemplate .= $_;
+}
+close(MT);
+open(IT,"<$i4jtemplatefile") or die("Could not open '$i4jtemplatefile' for reading");
 while(<IT>){
   $i4jtemplate .= $_;
 }
 close(IT);
+my $macauto;
 my $i4jauto;
 
+my $macautofile = $mactemplatefile;
+$macautofile =~ s/template/auto$1/;
+
 my $i4jautofile = $i4jtemplatefile;
 $i4jautofile =~ s/template/auto$1/;
 
+for my $key (sort keys %$add_associations) {
+  my $a = $add_associations->{$key};
+  warn("Known file association for $a->{shortname} (".join(",",@{$a->{extensions}}).")\n");
+}
+
+open(MA,">$macautofile") or die ("Could not open '$macautofile' for writing");
+print MA "<key>CFBundleDocumentTypes</key>\n<array>\n\n";
+
 open(IA,">$i4jautofile") or die ("Could not open '$i4jautofile' for writing");
 
 open(IN, "<$fileformats") or die ("Could not open '$fileformats' for reading");
@@ -74,7 +97,7 @@ while(my $line = <IN>) {
     my $name = $2;
     my $extensions = $3;
     $extensions =~ s/\s+//g;
-    my @possextensions = split(m/,/,$extensions);
+    my @possextensions = map(lc($_),split(m/,/,$extensions));
     my @extensions;
     my $addext = $add_extensions->{$shortname};
     if (ref($addext) eq "ARRAY") {
@@ -91,47 +114,108 @@ while(my $line = <IN>) {
       name => $name,
       extensions => \@extensions
     };
-    warn("Adding file association for $shortname\n");
+    warn("Reading file association for $shortname (".join(",",@extensions).")\n");
   }
 }
 close(IN);
 
 my %all_associations = (%$file_associations, %$add_associations);
 
-for my $shortname (@put_first, sort keys %all_associations) {
+my @ordered = (@put_first, @non_primary);
+for my $key (sort keys %all_associations) {
+  next if grep($_ eq $key, @ordered);
+  push(@ordered, $key);
+}
+my $num = $#ordered + 1;
+
+warn("--\n");
+
+my $i4jcount = 0;
+for my $shortname (@ordered) {
   my $a = $all_associations{$shortname};
-  if (ref($a) ne "HASH") {
-    next;
-  }
+  next if (ref($a) ne "HASH");
 
   my $name = $a->{name};
   my $extensions = $a->{extensions};
   my $mimetype = $mimetypes->{$shortname};
-  $mimetype = "text/x-$shortname" unless $mimetype;
+  $mimetype = "application/x-$shortname+txt" unless $mimetype;
 
   my $iconfile = $a->{iconfile};
   $iconfile = "Jalview-File" unless $iconfile;
 
-  my @extensions = @$extensions;
-  #warn("LINE: $line\nFound extensions '".join("', '", @extensions)."' for $name Files ($shortname)'n");
-
-  my $i4jentry = $i4jtemplate;
-
-  $i4jentry =~ s/\$\$NAME\$\$/$name/g;
-  $i4jentry =~ s/\$\$SHORTNAME\$\$/$shortname/g;
-  $i4jentry =~ s/\$\$MIMETYPE\$\$/$mimetype/g;
-  $i4jentry =~ s/\$\$ICONFILE\$\$/$iconfile/g;
+  my $primary = (! grep($_ eq $shortname, @non_primary));
+  my $primarystring = $primary?"true":"false";
+  my $role = $primary?"Editor":"Viewer";
 
-  for my $ext (@extensions) {
-    my $i4jextentry = $i4jentry;
-    $i4jextentry =~ s/\$\$EXTENSION\$\$/$ext/g;
-    $i4jextentry =~ s/\$\$ID\$\$/$id/g;
-    $id++;
+  my @extensions = @$extensions;
 
-    print IA $i4jextentry;
+  my $xname = xml_escape($name);
+  my $xmimetype = xml_escape($mimetype);
+  my $xshortname = xml_escape($shortname);
+  my $xiconfile = xml_escape($iconfile);
+  my $xrole = xml_escape($role);
+  my $xROLE = xml_escape(uc($role));
+  my $xprimarystring = xml_escape($primarystring);
+
+  my $macentry = $mactemplate;
+  $macentry =~ s/\$\$NAME\$\$/$xname/g;
+  $macentry =~ s/\$\$SHORTNAME\$\$/$xshortname/g;
+  $macentry =~ s/\$\$MIMETYPE\$\$/$xmimetype/g;
+  $macentry =~ s/\$\$ICONFILE\$\$/$xiconfile/g;
+  $macentry =~ s/\$\$ROLE\$\$/$xrole/g;
+  $macentry =~ s/\$\$PRIMARY\$\$/$xprimarystring/g;
+  while ($macentry =~ m/\$\$([^\$]*)EXTENSIONS([^\$]*)\$\$/) {
+    my $pre = $1;
+    my $post = $2;
+    my $macextensions;
+    for my $ext (@extensions) {
+      my $xext = xml_escape($ext);
+      $macextensions .= $pre.$xext.$post;
+    }
+    $macentry =~ s/\$\$${pre}EXTENSIONS${post}\$\$/$macextensions/g;
   }
+  print MA $macentry;
+
+  my $i4jentry = $i4jtemplate;
+  $i4jentry =~ s/\$\$NAME\$\$/$xname/g;
+  $i4jentry =~ s/\$\$SHORTNAME\$\$/$xshortname/g;
+  $i4jentry =~ s/\$\$MIMETYPE\$\$/$xmimetype/g;
+  $i4jentry =~ s/\$\$ICONFILE\$\$/$xiconfile/g;
+  $i4jentry =~ s/\$\$PRIMARY\$\$/$xprimarystring/g;
+  $i4jentry =~ s/\$\$MACASSOCIATIONROLE\$\$/$xROLE/g;
+
+  my $ext = join(",",sort(@extensions));
+  my $xdisplayext = xml_escape(join(", ", map(".$_",sort(@extensions))));
+  my $progresspercent = int(($i4jcount/$num)*100);
+  $progresspercent = 100 if $progresspercent > 100;
+  $i4jcount++;
+  my $xext = xml_escape($ext);
+  my $addunixextension = "true";
+
+  $i4jentry =~ s/\$\$ADDUNIXEXTENSION\$\$/$addunixextension/g;
+  $i4jentry =~ s/\$\$EXTENSION\$\$/$xext/g;
+  $i4jentry =~ s/\$\$DISPLAYEXTENSION\$\$/$xdisplayext/g;
+  $i4jentry =~ s/\$\$PROGRESSPERCENT\$\$/$progresspercent/g;
+  $i4jentry =~ s/\$\$ID\$\$/$id/g;
+  $id++;
+  $i4jentry =~ s/\$\$ID1\$\$/$id/g;
+  $id++;
+  $i4jentry =~ s/\$\$ID2\$\$/$id/g;
+  $id++;
+
+  print IA $i4jentry;
 
   delete $all_associations{$shortname};
+  warn("Writing entry for $name (".join(",",@$extensions).": $mimetype)\n");
 }
 
 close(IA);
+print MA "</array>\n";
+close(MA);
+
+sub xml_escape {
+  my $x = shift;
+  # stolen from Pod::Simple::XMLOutStream in base distro
+  $x =~ s/([^-\n\t !\#\$\%\(\)\*\+,\.\~\/\:\;=\?\@\[\\\]\^_\`\{\|\}a-zA-Z0-9])/'&#'.(ord($1)).';'/eg;
+  return $x;
+}