phylotastic hackathon at NESCENT 120606

[jalview.git] / wiki / Archaeopteryx.wiki

diff --git a/wiki/Archaeopteryx.wiki b/wiki/Archaeopteryx.wiki
index d2034c9..7700953 100644 (file)
--- a/wiki/Archaeopteryx.wiki
+++ b/wiki/Archaeopteryx.wiki
@@ -6,6 +6,7 @@
 Under development!
 
 Documentation, tutorial, and examples for visualization, analysis, and editing of phylogenetic trees with [http://www.phylosoft.org/archaeopteryx/ Archaeopteryx].
+Some (older) documentation can also be found [http://aptxevo.wordpress.com/ here].
 
 For developers: Information on the underlying [http://www.phylosoft.org/forester/ forester] framework is available [forester here].
 
@@ -15,7 +16,7 @@ Author: [http://www.cmzmasek.net/ Christian M Zmasek], Sanford-Burnham Medical R
  
 Copyright (C) 2012 Christian M Zmasek. All rights reserved.
 
-
+----
 
 = Frequently Asked Questions =
 
@@ -25,6 +26,8 @@ Aptx can be used to display vector or expression data associated with tree nodes
 
   # Ensure the configuration file contains this line: "show_vector_data:               display yes"
   # Start Aptx and read in a tree ([http://forester.googlecode.com/files/apaf.xml example tree])
-  # Open "Tools" menu and select "read Vector/Expression Values" ([http://forester.googlecode.com/files/apaf_expression.tab example expression values])
+  # Open "Tools" menu and select "read Vector/Expression Values" to read in a matrix (of, for example, expression values) ([http://forester.googlecode.com/files/apaf_expression.tab example expression values])
+
+It is also possible to store vector data in phyloXML formatted files ([http://forester.googlecode.com/files/apaf_with_vector_data.xml example]).
 
-It is also possible to store vector data in phyloXML formatted files ([http://forester.googlecode.com/files/apaf_with_vector_data.xml example]).
\ No newline at end of file
+----
\ No newline at end of file