in progress

[jalview.git] / wiki / GSDI.wiki

diff --git a/wiki/GSDI.wiki b/wiki/GSDI.wiki
index a875f25..4bd8a25 100644 (file)
--- a/wiki/GSDI.wiki
+++ b/wiki/GSDI.wiki
@@ -1,27 +1,3 @@
-#summary preprocessing of gene trees for speciation/duplication inference
+#summary generalized speciation duplication inference
 
-= Generalized Speciation Duplication Inference
-
-== Purpose ==
-
-Infer duplication events on a gene tree given a trusted species tree.
-
-== Usage == 
-{{{
-java -Xmx1024m -cp
-path/to/forester.jar org.forester.application.gene_tree_preprocess <input tree in NH, NHX, Nexus, or phyloXML>
-}}}
-
-
-
-== Details ==
-
-Output consists of three files:
-  * input-name_preprocessed_gene_tree.phylo.xml
-  * input-name_species_present.txt
-  * input-name_removed_nodes.txt
-
-
-== Download ==
-
-Download forester.jar here: http://code.google.com/p/forester/downloads/list
\ No newline at end of file
+https://sites.google.com/site/cmzmasek/home/software/forester/gsdi
\ No newline at end of file