Edited wiki page GSDI through web user interface.

[jalview.git] / wiki / GSDI.wiki

diff --git a/wiki/GSDI.wiki b/wiki/GSDI.wiki
index 0f57750..517189d 100644 (file)
--- a/wiki/GSDI.wiki
+++ b/wiki/GSDI.wiki
@@ -22,10 +22,10 @@ path/to/forester.jar org.forester.application.gsdi [-options] <gene tree in phyl
   * -b: to use SDIse algorithm instead of GSDI algorithm (for binary species trees)
 
 ==== Gene tree ====
-Must be in phyloXM format, with taxonomy and sequence data in appropriate fields.
+Must be in phyloXM format, with taxonomy and sequence data in appropriate fields ([http://forester.googlecode.com/files/wnt_gene_tree.xml example]).
 
 ==== Species tree ====
-Must be in phyloXML format unless option -q is used.
+Must be in phyloXML format unless option -q is used ([http://forester.googlecode.com/files/species.xml example]).
 
 === Output ===
 
@@ -47,6 +47,11 @@ GSDI can establish a taxonomic mapping between gene and species tree on the foll
 `gsdi -g -q gene_tree.xml tree_of_life.nwk out.xml`
 
 
+=== Example files ===
+  * [http://forester.googlecode.com/files/wnt_gene_tree.xml gene tree]
+  * [http://forester.googlecode.com/files/species.xml species tree]
+  * [http://forester.googlecode.com/files/wnt_gsdi_log.txt log file (output)]
+
 
 == Reference ==