Edited wiki page RIO through web user interface.

[jalview.git] / wiki / RIO.wiki

diff --git a/wiki/RIO.wiki b/wiki/RIO.wiki
index 107deca..8bafb64 100644 (file)
--- a/wiki/RIO.wiki
+++ b/wiki/RIO.wiki
@@ -19,12 +19,12 @@ java -Xmx2048m -cp forester.jar org.forester.application.rio [options] <gene tre
   
 ==== Gene trees ====
 The gene trees ideally are in [http://www.biomedcentral.com/1471-2105/10/356/ phyloXML] format, with taxonomy and sequence data in appropriate fields; but can also be in New Hamphshire (Newick) or Nexus format, as long as species information can be extracted from the gene names (e.g. "HUMAN" from "BCL2_HUMAN") ([http://forester.googlecode.com/files/gene_trees_rio.nh example]).
-All gene trees must be completely binary.
+All gene trees must be *completely binary*.
 
 
 ==== Species tree ====
 Must be in [http://www.biomedcentral.com/1471-2105/10/356/ phyloXML] format ([http://forester.googlecode.com/files/species_tree_rio.xml example]). 
-The species tree is allowed to have nodes with more than two descendents (polytomies) as long as GSDIR ([GSDI GSDI] re-rooting) algorithm is used. 
+The species tree is allowed to have nodes with more than two descendents (polytomies), as long as the (slower) GSDIR ([GSDI GSDI] re-rooting) algorithm is used. 
 
 
 === Example ===