JAL-2805 bunch of needed methods/constants made public

[jalview.git] / wiki / RubyExamples.wiki

diff --git a/wiki/RubyExamples.wiki b/wiki/RubyExamples.wiki
index 75d648b..3d50199 100644 (file)
--- a/wiki/RubyExamples.wiki
+++ b/wiki/RubyExamples.wiki
@@ -1,10 +1,10 @@
 #summary Ruby examples
 
-= Introduction =
+= Ruby Examples =
 
-Various Ruby examples.
+Various simple Ruby examples.
 
-Author: [http://www.cmzmasek.net/ Christian M Zmasek], Sanford-Burnham Medical Research Institute
+Author: [https://sites.google.com/site/cmzmasek/ Christian Zmasek], Sanford-Burnham Medical Research Institute
 
  
 Copyright (C) 2011 Christian M Zmasek. All rights reserved.
@@ -12,12 +12,14 @@ Copyright (C) 2011 Christian M Zmasek. All rights reserved.
 
 = Using net/ftp to download all Proteomes from the Ensembl Database =
 
+This, or something like it, can be used to download from Ensembl all "pep.all.fa.gz" files.
+
 {{{
 require 'net/ftp'
 
 EMAIL           = 'myemail'
 PUB_RELEASE_DIR = '/pub/release-64/fasta'
-PEP_DIR          = '/pep'
+PEP_DIR         = '/pep'
 
 ftp = Net::FTP.new('ftp.ensembl.org', 'anonymous', EMAIL)
 ftp.passive = true # To avoid "No route to host" error.
@@ -31,7 +33,8 @@ files.each do | file |
     pepfiles = ftp.list()
     pepfiles.each do | pepfile |
       pepfile = pepfile.split().last
-      if pepfile =~ /all.fa./
+      if pepfile =~ /all.fa.gz/ # Only want the "all.fa.gz" files (and not the
+                                # "abinitio" files).
         ftp.getbinaryfile(pepfile)
         puts 'downloaded "' + pepfile + '"'
         count += 1