}}}
-= ddd =
+= Writing a phylogenetic tree to a graphics file (e.g. png, jpg) =
+
+{{{
+
+package examples;
import java.awt.Color;
import java.io.File;
public class phylo2graphics {
- public static void main(final String[] args) {
- try {
- Configuration config = new Configuration();
- // Could also read a configuration file with:
- // Configuration config = new Configuration("my_configuration_file.txt", false, false, false);
-
- config.putDisplayColors(TreeColorSet.BACKGROUND, new Color(255, 255, 255));
- config.putDisplayColors(TreeColorSet.BRANCH, new Color(0, 0, 0));
- config.putDisplayColors(TreeColorSet.TAXONOMY, new Color(0, 0, 0));
- config.setPhylogenyGraphicsType(Options.PHYLOGENY_GRAPHICS_TYPE.RECTANGULAR);
- AptxUtil.writePhylogenyToGraphicsFileNonInteractive(new File(
- "/home/czmasek/tol_117_TEST.xml"), new File(
- "/home/czmasek/tol_117_TEST_.png"), 1000, 1000,
- GraphicsExportType.PNG, config);
- }
- catch (IOException e) {
- e.printStackTrace();
- }
- }
-}
\ No newline at end of file
+ public static void main( final String[] args ) {
+ try {
+ final Configuration config = new Configuration();
+ // Could also read a configuration file with:
+ // Configuration config = new Configuration("my_configuration_file.txt", false, false, false);
+ config.putDisplayColors( TreeColorSet.BACKGROUND, new Color( 255, 255, 255 ) );
+ config.putDisplayColors( TreeColorSet.BRANCH, new Color( 0, 0, 0 ) );
+ config.putDisplayColors( TreeColorSet.TAXONOMY, new Color( 0, 0, 0 ) );
+ config.setPhylogenyGraphicsType( Options.PHYLOGENY_GRAPHICS_TYPE.RECTANGULAR );
+ AptxUtil.writePhylogenyToGraphicsFile( new File( "my_tree.xml" ),
+ new File( "my_tree_graphics.png" ),
+ 1000,
+ 1000,
+ GraphicsExportType.PNG,
+ config );
+ // If the tree 'phy' already exists, can also use this:
+ AptxUtil.writePhylogenyToGraphicsFile( phy,
+ new File( "out.png" ),
+ 1000,
+ 1000,
+ GraphicsExportType.PNG,
+ config );
+ }
+ catch ( final IOException e ) {
+ e.printStackTrace();
+ }
+ }
+}
+
+}}}
\ No newline at end of file