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[jalview.git] / wiki / genetreepreprocessing.wiki
index b07f23b..25348f9 100644 (file)
@@ -1,3 +1,5 @@
+#summary preprocessing of gene trees for speciation/duplication inference
+
 = Gene tree preprocessing =
 
 == Purpose ==
@@ -14,8 +16,9 @@ path/to/forester.jar org.forester.application.gene_tree_preprocess <input tree i
 
 == Details ==
 
-Output is two files:
+Output consists of three files:
   * input-name_preprocessed_gene_tree.phylo.xml
+  * input-name_species_present.txt
   * input-name_removed_nodes.txt