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author	Ben Soares <b.soares@dundee.ac.uk>
	Fri, 3 Feb 2023 21:10:51 +0000 (21:10 +0000)
committer	Ben Soares <b.soares@dundee.ac.uk>
	Fri, 3 Feb 2023 21:10:51 +0000 (21:10 +0000)
commit	01f8ff469a507604ed961418f7c80f9b245e60ca
tree	4ae00363a8a7ce073ac3256da12c76f0c7ed966b	tree \| snapshot
parent	5d01a31888d046245981a4171850acd63a1f2862	commit \| diff

JAL-629 Fasta sequence id reading whitespace fix. Flexioble pae json keys and structure. Headless fixes. Logging fixes (MessageManager -- test broken). ArgParser and Console helper methods. Commands added e.g. --colour=gecos:flower.

13 files changed: