source.jalview.org Git - jalview.git/commit

git://source.jalview.org / jalview.git / commit

author	cmzmasek@gmail.com <cmzmasek@gmail.com@ca865154-3058-d1c3-3e42-d8f55a55bdbd>
	Tue, 18 Oct 2011 22:03:47 +0000 (22:03 +0000)
committer	cmzmasek@gmail.com <cmzmasek@gmail.com@ca865154-3058-d1c3-3e42-d8f55a55bdbd>
	Tue, 18 Oct 2011 22:03:47 +0000 (22:03 +0000)
commit	038c34792757a86f24296de5683e722fab3f9307
tree	7a958118e5539286fe194844d2111538428025f8	tree \| snapshot
parent	cc9d475aad3b7f53b27ee8f048c16398bdba96b5	commit \| diff

big refactoring (moving of methods)

40 files changed:

forester/java/src/org/forester/application/confadd.java		diff \| blob \| history
forester/java/src/org/forester/application/count_support.java		diff \| blob \| history
forester/java/src/org/forester/application/decorator.java		diff \| blob \| history
forester/java/src/org/forester/application/nhx_too.java		diff \| blob \| history
forester/java/src/org/forester/application/pccx.java		diff \| blob \| history
forester/java/src/org/forester/application/phyloxml_converter.java		diff \| blob \| history
forester/java/src/org/forester/application/printAllSpecies.java		diff \| blob \| history
forester/java/src/org/forester/application/printSameOrder.java		diff \| blob \| history
forester/java/src/org/forester/application/strip.java		diff \| blob \| history
forester/java/src/org/forester/application/support_statistics.java		diff \| blob \| history
forester/java/src/org/forester/application/support_transfer.java		diff \| blob \| history
forester/java/src/org/forester/application/surf_paup.java		diff \| blob \| history
forester/java/src/org/forester/application/surfacing.java		diff \| blob \| history
forester/java/src/org/forester/application/surfacing_hmmpfam.java		diff \| blob \| history
forester/java/src/org/forester/application/ta.java		diff \| blob \| history
forester/java/src/org/forester/archaeopteryx/Archaeopteryx.java		diff \| blob \| history
forester/java/src/org/forester/archaeopteryx/ArchaeopteryxE.java		diff \| blob \| history
forester/java/src/org/forester/archaeopteryx/MainFrame.java		diff \| blob \| history
forester/java/src/org/forester/archaeopteryx/MainFrameApplication.java		diff \| blob \| history
forester/java/src/org/forester/archaeopteryx/NodeEditPanel.java		diff \| blob \| history
forester/java/src/org/forester/archaeopteryx/TreePanel.java		diff \| blob \| history
forester/java/src/org/forester/archaeopteryx/UrlTreeReader.java		diff \| blob \| history
forester/java/src/org/forester/archaeopteryx/Util.java		diff \| blob \| history
forester/java/src/org/forester/archaeopteryx/webservices/BasicPhylogeniesWebserviceClient.java		diff \| blob \| history
forester/java/src/org/forester/archaeopteryx/webservices/PhylogeniesWebserviceClient.java		diff \| blob \| history
forester/java/src/org/forester/archaeopteryx/webservices/WebserviceUtil.java		diff \| blob \| history
forester/java/src/org/forester/io/parsers/FastaParser.java		diff \| blob \| history
forester/java/src/org/forester/io/parsers/nexus/NexusPhylogeniesParser.java		diff \| blob \| history
forester/java/src/org/forester/io/parsers/nhx/NHXParser.java		diff \| blob \| history
forester/java/src/org/forester/io/parsers/util/ParserUtils.java		diff \| blob \| history
forester/java/src/org/forester/phylogeny/PhylogenyMethods.java		diff \| blob \| history
forester/java/src/org/forester/phylogeny/PhylogenyNode.java		diff \| blob \| history
forester/java/src/org/forester/sdi/DistanceCalculator.java		diff \| blob \| history
forester/java/src/org/forester/sdi/ORcount.java		diff \| blob \| history
forester/java/src/org/forester/surfacing/SurfacingUtil.java		diff \| blob \| history
forester/java/src/org/forester/test/Test.java		diff \| blob \| history
forester/java/src/org/forester/test/examples/Example1.java		diff \| blob \| history
forester/java/src/org/forester/test/examples/Example4.java		diff \| blob \| history
forester/java/src/org/forester/tools/PhylogenyDecorator.java		diff \| blob \| history
forester/java/src/org/forester/util/ForesterUtil.java		diff \| blob \| history

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