source.jalview.org Git - jalview.git/commit

git://source.jalview.org / jalview.git / commit

author	Mateusz Warowny <mmzwarowny@dundee.ac.uk>
	Tue, 16 Jul 2024 15:33:25 +0000 (17:33 +0200)
committer	Jim Procter <jprocter@dundee.ac.uk>
	Tue, 17 Dec 2024 13:50:01 +0000 (13:50 +0000)
commit	1c995975105711cb38f13f28fe0bc867fba3093b
tree	eb34a5069df270ff1574a33a1c5c11db91cd51d1	tree \| snapshot
parent	b8c0c4d78deccb7901d905a248aba47ea1c87a6a	commit \| diff
parent	c4d23061be96300cc0af4c25d8628665a9c2a155	commit \| diff

Merge branch develop with 2_12

247 files changed:

.settings/org.eclipse.buildship.core.prefs	diff1 \|	diff2 \|	blob \| history
RELEASE~	\|	\|	blob
build.gradle	diff1 \|	diff2 \|	blob \| history
gradle.properties	diff1 \|	diff2 \|	blob \| history
help/help/help.jhm	diff1 \|	diff2 \|	blob \| history
help/help/helpTOC.xml	diff1 \|	diff2 \|	blob \| history
resources/lang/Messages.properties	diff1 \|	diff2 \|	blob \| history
resources/lang/Messages_es.properties	diff1 \|	diff2 \|	blob \| history
schemas/jalview.xsd	diff1 \|	diff2 \|	blob \| history
src/jalview/analysis/AAFrequency.java	diff1 \|	diff2 \|	blob \| history
src/jalview/analysis/AlignmentSorter.java	diff1 \|	diff2 \|	blob \| history
src/jalview/analysis/AlignmentUtils.java	diff1 \|	diff2 \|	blob \| history
src/jalview/analysis/CrossRef.java	diff1 \|	diff2 \|	blob \| history
src/jalview/analysis/Dna.java	diff1 \|	diff2 \|	blob \| history
src/jalview/analysis/Finder.java	diff1 \|	diff2 \|	blob \| history
src/jalview/analysis/ParseProperties.java	diff1 \|	diff2 \|	blob \| history
src/jalview/analysis/SeqsetUtils.java	diff1 \|	diff2 \|	blob \| history
src/jalview/analysis/scoremodels/ScoreModels.java	diff1 \|	diff2 \|	blob \| history
src/jalview/analytics/Plausible.java	\|	diff2 \|	blob \| history
src/jalview/api/AlignViewportI.java	diff1 \|	diff2 \|	blob \| history
src/jalview/api/structures/JalviewStructureDisplayI.java	diff1 \|	diff2 \|	blob \| history
src/jalview/appletgui/APopupMenu.java	diff1 \|	diff2 \|	blob \| history
src/jalview/appletgui/AlignFrame.java	diff1 \|	diff2 \|	blob \| history
src/jalview/appletgui/AlignViewport.java	diff1 \|	diff2 \|	blob \| history
src/jalview/appletgui/AlignmentPanel.java	diff1 \|	diff2 \|	blob \| history
src/jalview/appletgui/AnnotationPanel.java	diff1 \|	diff2 \|	blob \| history
src/jalview/appletgui/RedundancyPanel.java	diff1 \|	diff2 \|	blob \| history
src/jalview/appletgui/SeqPanel.java	diff1 \|	diff2 \|	blob \| history
src/jalview/appletgui/TreeCanvas.java	diff1 \|	diff2 \|	blob \| history
src/jalview/bin/ApplicationSingletonProvider.java	diff1 \|	\|	blob \| history
src/jalview/bin/ArgsParser.java	diff1 \|	diff2 \|	blob \| history
src/jalview/bin/Cache.java	diff1 \|	diff2 \|	blob \| history
src/jalview/bin/Commands.java	\|	diff2 \|	blob \| history
src/jalview/bin/Console.java	diff1 \|	diff2 \|	blob \| history
src/jalview/bin/Jalview.java	diff1 \|	diff2 \|	blob \| history
src/jalview/bin/JalviewLite.java	diff1 \|	diff2 \|	blob \| history
src/jalview/controller/AlignViewController.java	diff1 \|	diff2 \|	blob \| history
src/jalview/datamodel/Alignment.java	diff1 \|	diff2 \|	blob \| history
src/jalview/datamodel/AlignmentAnnotation.java	diff1 \|	diff2 \|	blob \| history
src/jalview/datamodel/AlignmentView.java	diff1 \|	diff2 \|	blob \| history
src/jalview/datamodel/AnnotatedCollectionI.java	diff1 \|	diff2 \|	blob \| history
src/jalview/datamodel/PDBEntry.java	diff1 \|	diff2 \|	blob \| history
src/jalview/datamodel/Sequence.java	diff1 \|	diff2 \|	blob \| history
src/jalview/datamodel/SequenceGroup.java	diff1 \|	diff2 \|	blob \| history
src/jalview/datamodel/SequenceI.java	diff1 \|	diff2 \|	blob \| history
src/jalview/datamodel/features/SequenceFeatures.java	diff1 \|	diff2 \|	blob \| history
src/jalview/ext/ensembl/EnsemblGene.java	diff1 \|	diff2 \|	blob \| history
src/jalview/ext/ensembl/EnsemblSeqProxy.java	diff1 \|	diff2 \|	blob \| history
src/jalview/ext/jmol/JalviewJmolBinding.java	diff1 \|	diff2 \|	blob \| history
src/jalview/fts/service/pdb/PDBFTSRestClient.java	diff1 \|	diff2 \|	blob \| history
src/jalview/fts/service/uniprot/UniProtFTSRestClient.java	diff1 \|	diff2 \|	blob \| history
src/jalview/gui/AlignExportOptions.java	diff1 \|	diff2 \|	blob \| history
src/jalview/gui/AlignFrame.java	diff1 \|	diff2 \|	blob \| history
src/jalview/gui/AlignViewport.java	diff1 \|	diff2 \|	blob \| history
src/jalview/gui/AlignmentPanel.java	diff1 \|	diff2 \|	blob \| history
src/jalview/gui/AnnotationChooser.java	diff1 \|	diff2 \|	blob \| history
src/jalview/gui/AnnotationColourChooser.java	diff1 \|	diff2 \|	blob \| history
src/jalview/gui/AnnotationExporter.java	diff1 \|	diff2 \|	blob \| history
src/jalview/gui/AnnotationLabels.java	diff1 \|	diff2 \|	blob \| history
src/jalview/gui/AnnotationPanel.java	diff1 \|	diff2 \|	blob \| history
src/jalview/gui/AppJmol.java	diff1 \|	diff2 \|	blob \| history
src/jalview/gui/AppJmolBinding.java	diff1 \|	diff2 \|	blob \| history
src/jalview/gui/AssociatePdbFileWithSeq.java	diff1 \|	diff2 \|	blob \| history
src/jalview/gui/CalculationChooser.java	diff1 \|	diff2 \|	blob \| history
src/jalview/gui/ChimeraViewFrame.java	diff1 \|	diff2 \|	blob \| history
src/jalview/gui/ColourMenuHelper.java	diff1 \|	diff2 \|	blob \| history
src/jalview/gui/CrossRefAction.java	diff1 \|	diff2 \|	blob \| history
src/jalview/gui/CutAndPasteTransfer.java	diff1 \|	diff2 \|	blob \| history
src/jalview/gui/Desktop.java	diff1 \|	diff2 \|	blob \| history
src/jalview/gui/FeatureEditor.java	diff1 \|	diff2 \|	blob \| history
src/jalview/gui/FeatureSettings.java	diff1 \|	diff2 \|	blob \| history
src/jalview/gui/Finder.java	diff1 \|	diff2 \|	blob \| history
src/jalview/gui/FontChooser.java	diff1 \|	diff2 \|	blob \| history
src/jalview/gui/IdCanvas.java	diff1 \|	diff2 \|	blob \| history
src/jalview/gui/IdPanel.java	diff1 \|	diff2 \|	blob \| history
src/jalview/gui/ImageExporter.java	diff1 \|	diff2 \|	blob \| history
src/jalview/gui/JvOptionPane.java	diff1 \|	diff2 \|	blob \| history
src/jalview/gui/LineartOptions.java	diff1 \|	diff2 \|	blob \| history
src/jalview/gui/OverviewPanel.java	diff1 \|	diff2 \|	blob \| history
src/jalview/gui/PCAPanel.java	diff1 \|	diff2 \|	blob \| history
src/jalview/gui/PaintRefresher.java	diff1 \|	diff2 \|	blob \| history
src/jalview/gui/PairwiseAlignPanel.java	diff1 \|	diff2 \|	blob \| history
src/jalview/gui/PopupMenu.java	diff1 \|	diff2 \|	blob \| history
src/jalview/gui/Preferences.java	diff1 \|	diff2 \|	blob \| history
src/jalview/gui/ProgressBar.java	diff1 \|	diff2 \|	blob \| history
src/jalview/gui/PymolViewer.java	diff1 \|	diff2 \|	blob \| history
src/jalview/gui/QuitHandler.java	\|	diff2 \|	blob \| history
src/jalview/gui/RedundancyPanel.java	diff1 \|	diff2 \|	blob \| history
src/jalview/gui/RestInputParamEditDialog.java	diff1 \|	diff2 \|	blob \| history
src/jalview/gui/RestServiceEditorPane.java	diff1 \|	diff2 \|	blob \| history
src/jalview/gui/ScalePanel.java	diff1 \|	diff2 \|	blob \| history
src/jalview/gui/SeqCanvas.java	diff1 \|	diff2 \|	blob \| history
src/jalview/gui/SeqPanel.java	diff1 \|	diff2 \|	blob \| history
src/jalview/gui/SequenceFetcher.java	diff1 \|	diff2 \|	blob \| history
src/jalview/gui/SliderPanel.java	diff1 \|	diff2 \|	blob \| history
src/jalview/gui/SplashScreen.java	diff1 \|	diff2 \|	blob \| history
src/jalview/gui/SplitFrame.java	diff1 \|	diff2 \|	blob \| history
src/jalview/gui/StructureChooser.java	diff1 \|	diff2 \|	blob \| history
src/jalview/gui/StructureViewer.java	diff1 \|	diff2 \|	blob \| history
src/jalview/gui/StructureViewerBase.java	diff1 \|	diff2 \|	blob \| history
src/jalview/gui/TreeCanvas.java	diff1 \|	diff2 \|	blob \| history
src/jalview/gui/TreePanel.java	diff1 \|	diff2 \|	blob \| history
src/jalview/gui/UserDefinedColours.java	diff1 \|	diff2 \|	blob \| history
src/jalview/gui/VamsasApplication.java	diff1 \|	diff2 \|	blob \| history
src/jalview/gui/WebserviceInfo.java	diff1 \|	diff2 \|	blob \| history
src/jalview/gui/WsJobParameters.java	diff1 \|	diff2 \|	blob \| history
src/jalview/httpserver/HttpServer.java	diff1 \|	diff2 \|	blob \| history
src/jalview/io/AlignFile.java	diff1 \|	diff2 \|	blob \| history
src/jalview/io/AnnotationFile.java	diff1 \|	diff2 \|	blob \| history
src/jalview/io/AppletFormatAdapter.java	diff1 \|	diff2 \|	blob \| history
src/jalview/io/BackupFiles.java	diff1 \|	diff2 \|	blob \| history
src/jalview/io/BioJsHTMLOutput.java	diff1 \|	diff2 \|	blob \| history
src/jalview/io/FileFormat.java	diff1 \|	diff2 \|	blob \| history
src/jalview/io/FileFormats.java	diff1 \|	diff2 \|	blob \| history
src/jalview/io/FileLoader.java	diff1 \|	diff2 \|	blob \| history
src/jalview/io/IdentifyFile.java	diff1 \|	diff2 \|	blob \| history
src/jalview/io/NewickFile.java	diff1 \|	diff2 \|	blob \| history
src/jalview/io/RnamlFile.java	diff1 \|	diff2 \|	blob \| history
src/jalview/io/SequenceAnnotationReport.java	diff1 \|	diff2 \|	blob \| history
src/jalview/io/StockholmFile.java	diff1 \|	diff2 \|	blob \| history
src/jalview/io/VamsasAppDatastore.java	diff1 \|	diff2 \|	blob \| history
src/jalview/io/WSWUBlastClient.java	diff1 \|	diff2 \|	blob \| history
src/jalview/io/gff/Gff3Helper.java	diff1 \|	diff2 \|	blob \| history
src/jalview/io/packed/JalviewDataset.java	diff1 \|	diff2 \|	blob \| history
src/jalview/io/packed/ParsePackedSet.java	diff1 \|	diff2 \|	blob \| history
src/jalview/io/vamsas/Sequencemapping.java	diff1 \|	diff2 \|	blob \| history
src/jalview/jbgui/GAlignFrame.java	diff1 \|	diff2 \|	blob \| history
src/jalview/jbgui/GCutAndPasteHtmlTransfer.java	diff1 \|	diff2 \|	blob \| history
src/jalview/jbgui/GCutAndPasteTransfer.java	diff1 \|	diff2 \|	blob \| history
src/jalview/jbgui/GDesktop.java	diff1 \|	diff2 \|	blob \| history
src/jalview/jbgui/GPCAPanel.java	diff1 \|	diff2 \|	blob \| history
src/jalview/jbgui/GPreferences.java	diff1 \|	diff2 \|	blob \| history
src/jalview/jbgui/GStructureViewer.java	diff1 \|	diff2 \|	blob \| history
src/jalview/jbgui/GTreePanel.java	diff1 \|	diff2 \|	blob \| history
src/jalview/project/Jalview2XML.java	diff1 \|	diff2 \|	blob \| history
src/jalview/renderer/AnnotationRenderer.java	diff1 \|	diff2 \|	blob \| history
src/jalview/rest/RestHandler.java	diff1 \|	diff2 \|	blob \| history
src/jalview/schemes/ColourSchemes.java	diff1 \|	diff2 \|	blob \| history
src/jalview/schemes/JalviewColourScheme.java	diff1 \|	diff2 \|	blob \| history
src/jalview/schemes/ResidueProperties.java	diff1 \|	diff2 \|	blob \| history
src/jalview/structure/StructureImportSettings.java	diff1 \|	diff2 \|	blob \| history
src/jalview/structure/StructureSelectionManager.java	diff1 \|	diff2 \|	blob \| history
src/jalview/urls/IdentifiersUrlProvider.java	diff1 \|	diff2 \|	blob \| history
src/jalview/util/ArrayUtils.java	diff1 \|	diff2 \|	blob \| history
src/jalview/util/ColorUtils.java	diff1 \|	diff2 \|	blob \| history
src/jalview/util/Comparison.java	diff1 \|	diff2 \|	blob \| history
src/jalview/util/DBRefUtils.java	diff1 \|	diff2 \|	blob \| history
src/jalview/util/FileUtils.java	diff1 \|	diff2 \|	blob \| history
src/jalview/util/HttpUtils.java	diff1 \|	diff2 \|	blob \| history
src/jalview/util/MessageManager.java	diff1 \|	diff2 \|	blob \| history
src/jalview/util/Platform.java	diff1 \|	diff2 \|	blob \| history
src/jalview/util/StringUtils.java	diff1 \|	diff2 \|	blob \| history
src/jalview/viewmodel/AlignmentViewport.java	diff1 \|	diff2 \|	blob \| history
src/jalview/viewmodel/OverviewDimensions.java	diff1 \|	diff2 \|	blob \| history
src/jalview/viewmodel/ViewportRanges.java	diff1 \|	diff2 \|	blob \| history
src/jalview/workers/ConsensusThread.java	diff1 \|	diff2 \|	blob \| history
src/jalview/ws/JobStateSummary.java	diff1 \|	diff2 \|	blob \| history
src/jalview/ws/SequenceFetcher.java	diff1 \|	diff2 \|	blob \| history
src/jalview/ws/dbsources/EBIAlfaFold.java	diff1 \|	diff2 \|	blob \| history
src/jalview/ws/dbsources/EmblXmlSource.java	diff1 \|	diff2 \|	blob \| history
src/jalview/ws/dbsources/Pdb.java	diff1 \|	diff2 \|	blob \| history
src/jalview/ws/dbsources/Uniprot.java	diff1 \|	diff2 \|	blob \| history
src/jalview/ws/jws1/Discoverer.java	diff1 \|	diff2 \|	blob \| history
src/jalview/ws/jws1/JPredThread.java	diff1 \|	diff2 \|	blob \| history
src/jalview/ws/jws1/MsaWSThread.java	diff1 \|	diff2 \|	blob \| history
src/jalview/ws/jws1/SeqSearchWSThread.java	diff1 \|	diff2 \|	blob \| history
src/jalview/ws/jws2/JabaParamStore.java	diff1 \|	diff2 \|	blob \| history
src/jalview/ws/jws2/Jws2Discoverer.java	diff1 \|	diff2 \|	blob \| history
src/jalview/ws/jws2/ParameterUtils.java	diff1 \|	diff2 \|	blob \| history
src/jalview/ws/jws2/jabaws2/Jws2Instance.java	diff1 \|	diff2 \|	blob \| history
src/jalview/ws/rest/InputType.java	diff1 \|	diff2 \|	blob \| history
src/jalview/ws/rest/RestClient.java	diff1 \|	diff2 \|	blob \| history
src/jalview/ws/rest/RestJobThread.java	diff1 \|	diff2 \|	blob \| history
src/jalview/ws/sifts/SiftsClient.java	diff1 \|	diff2 \|	blob \| history
src/jalview/ws2/gui/WebServicesMenuManager.java	diff1 \|	\|	blob \| history
src/jalview/xml/binding/jalview/AlcodonFrame.java	diff1 \|	diff2 \|	blob \| history
src/jalview/xml/binding/jalview/Annotation.java	diff1 \|	diff2 \|	blob \| history
src/jalview/xml/binding/jalview/AnnotationColourScheme.java	diff1 \|	diff2 \|	blob \| history
src/jalview/xml/binding/jalview/AnnotationElement.java	diff1 \|	diff2 \|	blob \| history
src/jalview/xml/binding/jalview/DoubleMatrix.java	diff1 \|	diff2 \|	blob \| history
src/jalview/xml/binding/jalview/DoubleVector.java	diff1 \|	diff2 \|	blob \| history
src/jalview/xml/binding/jalview/Feature.java	diff1 \|	diff2 \|	blob \| history
src/jalview/xml/binding/jalview/FeatureMatcher.java	diff1 \|	diff2 \|	blob \| history
src/jalview/xml/binding/jalview/FeatureMatcherSet.java	diff1 \|	diff2 \|	blob \| history
src/jalview/xml/binding/jalview/FilterBy.java	diff1 \|	diff2 \|	blob \| history
src/jalview/xml/binding/jalview/JalviewModel.java	diff1 \|	diff2 \|	blob \| history
src/jalview/xml/binding/jalview/JalviewUserColours.java	diff1 \|	diff2 \|	blob \| history
src/jalview/xml/binding/jalview/MapListType.java	diff1 \|	diff2 \|	blob \| history
src/jalview/xml/binding/jalview/MapOnAMatrixType.java	\|	diff2 \|	blob \| history
src/jalview/xml/binding/jalview/Mapping.java	diff1 \|	diff2 \|	blob \| history
src/jalview/xml/binding/jalview/MatrixType.java	\|	diff2 \|	blob \| history
src/jalview/xml/binding/jalview/NoValueColour.java	diff1 \|	diff2 \|	blob \| history
src/jalview/xml/binding/jalview/ObjectFactory.java	diff1 \|	diff2 \|	blob \| history
src/jalview/xml/binding/jalview/PcaDataType.java	diff1 \|	diff2 \|	blob \| history
src/jalview/xml/binding/jalview/Pdbentry.java	diff1 \|	diff2 \|	blob \| history
src/jalview/xml/binding/jalview/Property.java	\|	diff2 \|	blob \| history
src/jalview/xml/binding/jalview/Sequence.java	diff1 \|	diff2 \|	blob \| history
src/jalview/xml/binding/jalview/SequenceSet.java	diff1 \|	diff2 \|	blob \| history
src/jalview/xml/binding/jalview/SequenceType.java	diff1 \|	diff2 \|	blob \| history
src/jalview/xml/binding/jalview/ThresholdType.java	diff1 \|	diff2 \|	blob \| history
src/jalview/xml/binding/jalview/VAMSAS.java	diff1 \|	diff2 \|	blob \| history
src/jalview/xml/binding/jalview/WebServiceParameterSet.java	diff1 \|	diff2 \|	blob \| history
src/jalview/xml/binding/jalview/package-info.java	diff1 \|	diff2 \|	blob \| history
test/jalview/analysis/CrossRefTest.java	diff1 \|	diff2 \|	blob \| history
test/jalview/analysis/FinderTest.java	diff1 \|	diff2 \|	blob \| history
test/jalview/analysis/TestAlignSeq.java	diff1 \|	diff2 \|	blob \| history
test/jalview/bin/CommandLineOperations.java	diff1 \|	diff2 \|	blob \| history
test/jalview/bin/CommandsTest2.java	\|	diff2 \|	blob \| history
test/jalview/bin/HiDPISettingTest1.java	diff1 \|	diff2 \|	blob \| history
test/jalview/bin/argparser/ArgParserTest.java	\|	diff2 \|	blob \| history
test/jalview/bin/argparser/testfiles/test_annotations.png	\|	\|	blob
test/jalview/datamodel/AlignmentAnnotationTests.java	diff1 \|	diff2 \|	blob \| history
test/jalview/datamodel/AlignmentTest.java	diff1 \|	diff2 \|	blob \| history
test/jalview/datamodel/SequenceTest.java	diff1 \|	diff2 \|	blob \| history
test/jalview/ext/jmol/JmolViewerTest.java	diff1 \|	diff2 \|	blob \| history
test/jalview/ext/rbvi/chimera/JalviewChimeraView.java	diff1 \|	diff2 \|	blob \| history
test/jalview/gui/AlignFrameTest.java	diff1 \|	diff2 \|	blob \| history
test/jalview/gui/AlignViewportTest.java	diff1 \|	diff2 \|	blob \| history
test/jalview/gui/AlignmentPanelTest.java	diff1 \|	diff2 \|	blob \| history
test/jalview/gui/AnnotationLabelsTest2.java	\|	diff2 \|	blob \| history
test/jalview/gui/DesktopTests.java	\|	diff2 \|	blob \| history
test/jalview/gui/FeatureSettingsTest.java	diff1 \|	diff2 \|	blob \| history
test/jalview/gui/FreeUpMemoryTest.java	diff1 \|	diff2 \|	blob \| history
test/jalview/gui/QuitHandlerTest.java	\|	diff2 \|	blob \| history
test/jalview/gui/SeqPanelTest.java	diff1 \|	diff2 \|	blob \| history
test/jalview/gui/SequenceRendererTest.java	diff1 \|	diff2 \|	blob \| history
test/jalview/gui/StructureChooserTest.java	diff1 \|	diff2 \|	blob \| history
test/jalview/hmmer/HMMERTest.java	diff1 \|	\|	blob \| history
test/jalview/io/AnnotatedPDBFileInputTest.java	diff1 \|	diff2 \|	blob \| history
test/jalview/io/BackupFilesTest.java	diff1 \|	diff2 \|	blob \| history
test/jalview/io/CrossRef2xmlTests.java	diff1 \|	diff2 \|	blob \| history
test/jalview/io/Jalview2xmlBase.java	diff1 \|	diff2 \|	blob \| history
test/jalview/io/JalviewExportPropertiesTests.java	diff1 \|	diff2 \|	blob \| history
test/jalview/io/SequenceAnnotationReportTest.java	diff1 \|	diff2 \|	blob \| history
test/jalview/io/StockholmFileTest.java	diff1 \|	diff2 \|	blob \| history
test/jalview/project/Jalview2xmlTests.java	diff1 \|	diff2 \|	blob \| history
test/jalview/renderer/OverviewResColourFinderTest.java	diff1 \|	diff2 \|	blob \| history
test/jalview/renderer/seqfeatures/FeatureColourFinderTest.java	diff1 \|	diff2 \|	blob \| history
test/jalview/renderer/seqfeatures/FeatureRendererTest.java	diff1 \|	diff2 \|	blob \| history
test/jalview/schemes/ClustalxColourSchemeTest.java	diff1 \|	diff2 \|	blob \| history
test/jalview/schemes/ColourSchemesTest.java	diff1 \|	diff2 \|	blob \| history
test/jalview/structure/Mapping.java	diff1 \|	diff2 \|	blob \| history
test/jalview/structure/StructureSelectionManagerTest.java	diff1 \|	diff2 \|	blob \| history
test/jalview/util/FileUtilsTest.java	diff1 \|	diff2 \|	blob \| history
test/jalview/ws/dbsources/EBIAlphaFoldTest.java	\|	diff2 \|	blob \| history
test/jalview/ws/sifts/SiftsClientTest.java	diff1 \|	diff2 \|	blob \| history
test/mc_view/PDBfileTest.java	diff1 \|	diff2 \|	blob \| history

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