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(parent: 949ead4) | patch
JAL-1473 refactor score matrices and tree score calculations to interface/api and...
authorJim Procter <jprocter@dundee.ac.uk>
Tue, 15 Apr 2014 15:09:20 +0000 (16:09 +0100)
committerJim Procter <jprocter@dundee.ac.uk>
Mon, 21 Apr 2014 13:09:16 +0000 (14:09 +0100)
commit27b77d2219147d3741d4af7377e13918a8ae972a
tree2d6720b6ddac11ffa252a32ec359ae962a897009tree | snapshot
parent949ead42100232b0a3654a19ed9f4d93b5e807c6commit | diff
JAL-1473 refactor score matrices and tree score calculations to interface/api and base implementations
src/jalview/analysis/NJTree.java diff | blob | history
src/jalview/analysis/PCA.java diff | blob | history
src/jalview/analysis/scoremodels/PIDScoreModel.java [new file with mode: 0644] blob
src/jalview/analysis/scoremodels/PairwiseSeqScoreModel.java [new file with mode: 0644] blob
src/jalview/analysis/scoremodels/SWScoreModel.java [new file with mode: 0644] blob
src/jalview/api/analysis/ScoreModelI.java [new file with mode: 0644] blob
src/jalview/datamodel/AlignmentView.java diff | blob | history
src/jalview/schemes/ResidueProperties.java diff | blob | history
src/jalview/schemes/ScoreMatrix.java diff | blob | history
test/jalview/schemes/ScoreMatrixPrinter.java diff | blob | history