in progress
authorcmzmasek@gmail.com <cmzmasek@gmail.com@ca865154-3058-d1c3-3e42-d8f55a55bdbd>
Wed, 9 Jul 2014 20:19:50 +0000 (20:19 +0000)
committercmzmasek@gmail.com <cmzmasek@gmail.com@ca865154-3058-d1c3-3e42-d8f55a55bdbd>
Wed, 9 Jul 2014 20:19:50 +0000 (20:19 +0000)
commit29e04321615da6b35c1e15c60e52caf3f21d8e6a
treeca481fab849247b9d18ffd5776c4ec0718500404
parentd58d62e4c76599d217d96b808a29f3b762a0a580
in progress
1221 files changed:
forester/java/classes/com/approximatrix/charting/AbstractChart.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/Axis.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/BufferedChart$RenderThread.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/BufferedChart.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/Chart.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/ChartEncoder.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/ChartUtilities.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/CoordSystem.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/DefaultChart.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/EncodingException.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/ExtendedChart.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/GenericChart.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/Legend.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/SimpleStrokeDefs.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/Title.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/coordsystem/AbstractCoordSystem.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/coordsystem/BoxCoordSystem.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/coordsystem/ClassicCoordSystem.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/coordsystem/ClassicCoordSystemUtilities.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/coordsystem/CoordSystem.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/coordsystem/CoordSystemUtilities.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/coordsystem/InvisibleCoordSystem.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/coordsystem/ticklocator/NumericTickLocator.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/coordsystem/ticklocator/NumericXTickLocator.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/coordsystem/ticklocator/NumericYTickLocator.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/coordsystem/ticklocator/ObjectTickLocator.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/coordsystem/ticklocator/ObjectXTickLocator.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/event/ChartDataModelEvent.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/event/ChartDataModelListener.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/event/InfoAvailableEvent.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/event/InfoAvailableListener.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/event/RenderChangeEvent.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/event/RenderChangeListener.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/fixtures/ModelData.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/model/AbstractChartDataModel.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/model/ChartDataModel.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/model/ChartDataModelConstraints.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/model/DataSet.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/model/DefaultChartDataModel.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/model/DefaultChartDataModelConstraints.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/model/DefaultDataSet.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/model/EditableChartDataModel.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/model/EditableDataSet.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/model/IntegratedImageModel.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/model/JDBCPlotter.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/model/JDBCPlotterException.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/model/MultiScatterDataModel$DataSet.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/model/MultiScatterDataModel$SeriesProperties.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/model/MultiScatterDataModel.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/model/MultiScatterDataModelConstraints.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/model/ObjectChartDataModel.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/model/ScatterDataModel$SeriesProperties.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/model/ScatterDataModel.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/model/StackedChartDataModelConstraints.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/model/threedimensional/AbstractDotPlotDataModel.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/model/threedimensional/ColorDotPlotDataModel.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/model/threedimensional/ColorScaleDotPlotDataModel.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/model/threedimensional/DotPlotDataModelConstraints.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/render/AbstractChartRenderer.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/render/AbstractRenderer.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/render/BarChartRenderer.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/render/ChartRenderingHints.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/render/ImageRenderer.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/render/InterpolationChartRenderer.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/render/LineChartRenderer.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/render/MultiScatterChartRenderer.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/render/PieChartRenderer.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/render/PlotChartRenderer.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/render/RadarChartRenderer.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/render/Renderer.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/render/RowColorModel.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/render/ScatterChartRenderer.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/render/StackedBarChartRenderer.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/render/colorscale/AbstractColorScale.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/render/colorscale/ColorScale.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/render/colorscale/IndexedColorScale.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/render/colorscale/SimpleColorScale.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/render/shape/Diamond2D$1.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/render/shape/Diamond2D.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/render/shape/Triangle2D$1.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/render/shape/Triangle2D.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/swing/AbstractChartPanel.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/swing/BufferedChartPanel.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/swing/ChartPanel.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/swing/ExtendedChartPanel.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/swing/InteractiveChartPanel.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/test/GraphFrame$1.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/test/GraphFrame$2.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/test/GraphFrame$3.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/test/GraphFrame$4.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/test/GraphFrame.class [new file with mode: 0644]
forester/java/classes/com/approximatrix/charting/test/ImageFilter.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/AGPL.txt [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/Anchor.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/Annotation.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/BadElementException.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/BaseColor.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/Chapter.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/ChapterAutoNumber.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/Chunk.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/DocListener.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/DocWriter.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/Document.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/DocumentException.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/Element.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/ElementListener.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/ExceptionConverter.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/Font$1.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/Font$FontFamily.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/Font$FontStyle.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/Font.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/FontFactory.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/FontFactoryImp.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/FontProvider.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/GreekList.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/Header.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/Image.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/ImgCCITT.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/ImgJBIG2.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/ImgRaw.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/ImgTemplate.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/ImgWMF.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/Jpeg.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/Jpeg2000.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/LICENSE.txt [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/LargeElement.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/List.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/ListItem.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/MarkedObject.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/MarkedSection.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/Meta.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/NOTICE.txt [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/PageSize.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/Paragraph.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/Phrase.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/Rectangle.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/RectangleReadOnly.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/RomanList.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/Section.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/SpecialSymbol.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/SplitCharacter.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/TextElementArray.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/Utilities.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/ZapfDingbatsList.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/ZapfDingbatsNumberList.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/error_messages/MessageLocalization.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/exceptions/BadPasswordException.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/exceptions/IllegalPdfSyntaxException.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/exceptions/InvalidPdfException.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/exceptions/UnsupportedPdfException.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/factories/GreekAlphabetFactory.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/factories/RomanAlphabetFactory.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/factories/RomanNumberFactory$RomanDigit.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/factories/RomanNumberFactory.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/html/HtmlEncoder.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/html/HtmlTags.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/html/HtmlUtilities.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/html/WebColors.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/html/simpleparser/CellWrapper.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/html/simpleparser/ChainedProperties$TagAttributes.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/html/simpleparser/ChainedProperties.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/html/simpleparser/ElementFactory.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/html/simpleparser/HTMLTagProcessor.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/html/simpleparser/HTMLTagProcessors$1.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/html/simpleparser/HTMLTagProcessors$10.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/html/simpleparser/HTMLTagProcessors$11.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/html/simpleparser/HTMLTagProcessors$12.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/html/simpleparser/HTMLTagProcessors$13.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/html/simpleparser/HTMLTagProcessors$14.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/html/simpleparser/HTMLTagProcessors$2.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/html/simpleparser/HTMLTagProcessors$3.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/html/simpleparser/HTMLTagProcessors$4.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/html/simpleparser/HTMLTagProcessors$5.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/html/simpleparser/HTMLTagProcessors$6.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/html/simpleparser/HTMLTagProcessors$7.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/html/simpleparser/HTMLTagProcessors$8.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/html/simpleparser/HTMLTagProcessors$9.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/html/simpleparser/HTMLTagProcessors.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/html/simpleparser/HTMLWorker.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/html/simpleparser/ImageProcessor.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/html/simpleparser/ImageProvider.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/html/simpleparser/ImageStore.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/html/simpleparser/LinkProcessor.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/html/simpleparser/StyleSheet.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/html/simpleparser/TableWrapper.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/log/Logger.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/log/LoggerFactory.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/log/NoOpLogger.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/AcroFields$1.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/AcroFields$FieldPosition.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/AcroFields$InstHit.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/AcroFields$Item.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/AcroFields$RevisionStream.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/AcroFields$SorterComparator.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/AcroFields.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/ArabicLigaturizer$charstruct.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/ArabicLigaturizer.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/AsianFontMapper.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/BadPdfFormatException.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/Barcode.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/Barcode128.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/Barcode39.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/BarcodeCodabar.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/BarcodeDatamatrix$DmParams.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/BarcodeDatamatrix$Placement.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/BarcodeDatamatrix$ReedSolomon.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/BarcodeDatamatrix.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/BarcodeEAN.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/BarcodeEANSUPP.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/BarcodeInter25.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/BarcodePDF417$Segment.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/BarcodePDF417$SegmentList.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/BarcodePDF417.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/BarcodePostnet.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/BarcodeQRCode.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/BaseField.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/BaseFont$StreamFont.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/BaseFont.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/BidiLine.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/BidiOrder.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/ByteBuffer.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/CFFFont$DictNumberItem.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/CFFFont$DictOffsetItem.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/CFFFont$Font.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/CFFFont$IndexBaseItem.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/CFFFont$IndexMarkerItem.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/CFFFont$IndexOffsetItem.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/CFFFont$Item.class [new file with mode: 0644]
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forester/java/classes/com/itextpdf/text/pdf/codec/JBIG2SegmentReader$JBIG2Segment.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/codec/JBIG2SegmentReader.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/codec/LZWCompressor.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/codec/LZWStringTable.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/codec/PngImage$NewByteArrayOutputStream.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/codec/PngImage.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/codec/PngWriter.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/codec/TIFFConstants.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/codec/TIFFDirectory.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/codec/TIFFFaxDecoder.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/codec/TIFFFaxDecompressor.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/codec/TIFFField.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/codec/TIFFLZWDecoder.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/codec/TiffImage.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/codec/TiffWriter$FieldAscii.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/codec/TiffWriter$FieldBase.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/codec/TiffWriter$FieldByte.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/codec/TiffWriter$FieldImage.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/codec/TiffWriter$FieldLong.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/codec/TiffWriter$FieldRational.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/codec/TiffWriter$FieldShort.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/codec/TiffWriter$FieldUndefined.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/codec/TiffWriter.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/codec/wmf/InputMeta.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/codec/wmf/MetaBrush.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/codec/wmf/MetaDo.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/codec/wmf/MetaFont.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/codec/wmf/MetaObject.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/codec/wmf/MetaPen.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/codec/wmf/MetaState.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/codec/wmf/Point.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/collection/PdfCollection.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/collection/PdfCollectionField.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/collection/PdfCollectionItem.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/collection/PdfCollectionSchema.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/collection/PdfCollectionSort.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/collection/PdfTargetDictionary.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/crypto/AESCipher.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/crypto/AESCipherCBCnoPad.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/crypto/ARCFOUREncryption.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/crypto/IVGenerator.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/draw/DottedLineSeparator.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/draw/DrawInterface.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/draw/LineSeparator.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/draw/VerticalPositionMark.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/events/FieldPositioningEvents.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/events/IndexEvents$1.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/events/IndexEvents$Entry.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/events/IndexEvents.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/events/PdfPCellEventForwarder.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/events/PdfPTableEventForwarder.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/events/PdfPageEventForwarder.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/fonts/Courier-Bold.afm [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/fonts/Courier-BoldOblique.afm [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/fonts/Courier-Oblique.afm [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/fonts/Courier.afm [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/fonts/FontsResourceAnchor.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/fonts/Helvetica-Bold.afm [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/fonts/Helvetica-BoldOblique.afm [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/fonts/Helvetica-Oblique.afm [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/fonts/Helvetica.afm [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/fonts/Symbol.afm [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/fonts/Times-Bold.afm [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/fonts/Times-BoldItalic.afm [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/fonts/Times-Italic.afm [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/fonts/Times-Roman.afm [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/fonts/ZapfDingbats.afm [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/fonts/cmap_info.txt [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/fonts/cmaps/CMap.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/fonts/cmaps/CMapParser$1.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/fonts/cmaps/CMapParser$LiteralName.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/fonts/cmaps/CMapParser$Operator.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/fonts/cmaps/CMapParser.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/fonts/cmaps/CodespaceRange.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/fonts/glyphlist.txt [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/hyphenation/ByteVector.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/hyphenation/CharVector.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/hyphenation/Hyphen.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/hyphenation/Hyphenation.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/hyphenation/HyphenationException.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/hyphenation/HyphenationTree.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/hyphenation/Hyphenator.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/hyphenation/PatternConsumer.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/hyphenation/SimplePatternParser.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/hyphenation/TernaryTree$Iterator$Item.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/hyphenation/TernaryTree$Iterator.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/hyphenation/TernaryTree.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/hyphenation/hyph/readme.txt [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/interfaces/PdfAnnotations.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/interfaces/PdfDocumentActions.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/interfaces/PdfEncryptionSettings.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/interfaces/PdfPageActions.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/interfaces/PdfRunDirection.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/interfaces/PdfVersion.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/interfaces/PdfViewerPreferences.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/interfaces/PdfXConformance.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/internal/PdfAnnotationsImp.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/internal/PdfVersionImp.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/internal/PdfViewerPreferencesImp.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/internal/PdfXConformanceImp.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/internal/PolylineShape.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/internal/PolylineShapeIterator.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/parser/ContentByteUtils.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/parser/ContentOperator.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/parser/FilteredRenderListener.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/parser/FilteredTextRenderListener.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/parser/GraphicsState.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/parser/ImageRenderInfo.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/parser/InlineImageUtils$InlineImageParseException.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/parser/InlineImageUtils.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/parser/LineSegment.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/parser/LocationTextExtractionStrategy$TextChunk.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/parser/LocationTextExtractionStrategy.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/parser/MarkedContentInfo.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/parser/MarkedContentRenderFilter.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/parser/Matrix.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/parser/PdfContentReaderTool.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/parser/PdfContentStreamProcessor$1.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/parser/PdfContentStreamProcessor$BeginMarkedContent.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/parser/PdfContentStreamProcessor$BeginMarkedContentDictionary.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/parser/PdfContentStreamProcessor$BeginText.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/parser/PdfContentStreamProcessor$Do.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/parser/PdfContentStreamProcessor$EndMarkedContent.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/parser/PdfContentStreamProcessor$EndText.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/parser/PdfContentStreamProcessor$FormXObjectDoHandler.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/parser/PdfContentStreamProcessor$IgnoreOperatorContentOperator.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/parser/PdfContentStreamProcessor$IgnoreXObjectDoHandler.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/parser/PdfContentStreamProcessor$ImageXObjectDoHandler.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/parser/PdfContentStreamProcessor$ModifyCurrentTransformationMatrix.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/parser/PdfContentStreamProcessor$MoveNextLineAndShowText.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/parser/PdfContentStreamProcessor$MoveNextLineAndShowTextWithSpacing.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/parser/PdfContentStreamProcessor$PopGraphicsState.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/parser/PdfContentStreamProcessor$ProcessGraphicsStateResource.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/parser/PdfContentStreamProcessor$PushGraphicsState.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/parser/PdfContentStreamProcessor$ResourceDictionary.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/parser/PdfContentStreamProcessor$SetTextCharacterSpacing.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/parser/PdfContentStreamProcessor$SetTextFont.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/parser/PdfContentStreamProcessor$SetTextHorizontalScaling.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/parser/PdfContentStreamProcessor$SetTextLeading.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/parser/PdfContentStreamProcessor$SetTextRenderMode.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/parser/PdfContentStreamProcessor$SetTextRise.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/parser/PdfContentStreamProcessor$SetTextWordSpacing.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/parser/PdfContentStreamProcessor$ShowText.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/parser/PdfContentStreamProcessor$ShowTextArray.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/parser/PdfContentStreamProcessor$TextMoveNextLine.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/parser/PdfContentStreamProcessor$TextMoveStartNextLine.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/parser/PdfContentStreamProcessor$TextMoveStartNextLineWithLeading.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/parser/PdfContentStreamProcessor$TextSetTextMatrix.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/parser/PdfContentStreamProcessor.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/parser/PdfImageObject.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/parser/PdfReaderContentParser.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/parser/PdfTextExtractor.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/parser/RegionTextRenderFilter.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/parser/RenderFilter.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/parser/RenderListener.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/parser/SimpleTextExtractionStrategy.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/parser/TaggedPdfReaderTool.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/parser/TextExtractionStrategy.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/parser/TextMarginFinder.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/parser/TextRenderInfo.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/parser/Vector.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/parser/XObjectDoHandler.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/qrcode/BitArray.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/qrcode/BitMatrix.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/qrcode/BitVector.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/qrcode/BlockPair.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/qrcode/ByteArray.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/qrcode/ByteMatrix.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/qrcode/CharacterSetECI.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/qrcode/EncodeHintType.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/qrcode/Encoder.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/qrcode/ErrorCorrectionLevel.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/qrcode/FormatInformation.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/qrcode/GF256.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/qrcode/GF256Poly.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/qrcode/MaskUtil.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/qrcode/MatrixUtil.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/qrcode/Mode.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/qrcode/QRCode.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/qrcode/QRCodeWriter.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/qrcode/ReedSolomonEncoder.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/qrcode/ReedSolomonException.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/qrcode/Version$ECB.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/qrcode/Version$ECBlocks.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/qrcode/Version.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/pdf/qrcode/WriterException.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/xml/XMLUtil.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/xml/XmlDomWriter.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/xml/simpleparser/EntitiesToSymbol.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/xml/simpleparser/EntitiesToUnicode.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/xml/simpleparser/IanaEncodings.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/xml/simpleparser/NewLineHandler.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/xml/simpleparser/SimpleXMLDocHandler.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/xml/simpleparser/SimpleXMLDocHandlerComment.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/xml/simpleparser/SimpleXMLParser.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/xml/simpleparser/handler/HTMLNewLineHandler.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/xml/simpleparser/handler/NeverNewLineHandler.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/xml/xmp/DublinCoreSchema.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/xml/xmp/LangAlt.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/xml/xmp/PdfA1Schema.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/xml/xmp/PdfSchema.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/xml/xmp/XmpArray.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/xml/xmp/XmpBasicSchema.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/xml/xmp/XmpMMSchema.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/xml/xmp/XmpReader.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/xml/xmp/XmpSchema.class [new file with mode: 0644]
forester/java/classes/com/itextpdf/text/xml/xmp/XmpWriter.class [new file with mode: 0644]
forester/java/classes/org/apache/commons/codec/BinaryDecoder.class [new file with mode: 0644]
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forester/java/classes/org/apache/commons/codec/binary/Hex.class [new file with mode: 0644]
forester/java/classes/org/apache/commons/codec/binary/StringUtils.class [new file with mode: 0644]
forester/java/classes/org/apache/commons/codec/digest/DigestUtils.class [new file with mode: 0644]
forester/java/classes/org/apache/commons/codec/language/AbstractCaverphone.class [new file with mode: 0644]
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forester/java/classes/org/apache/commons/codec/language/Caverphone1.class [new file with mode: 0644]
forester/java/classes/org/apache/commons/codec/language/Caverphone2.class [new file with mode: 0644]
forester/java/classes/org/apache/commons/codec/language/ColognePhonetic$CologneBuffer.class [new file with mode: 0644]
forester/java/classes/org/apache/commons/codec/language/ColognePhonetic$CologneInputBuffer.class [new file with mode: 0644]
forester/java/classes/org/apache/commons/codec/language/ColognePhonetic$CologneOutputBuffer.class [new file with mode: 0644]
forester/java/classes/org/apache/commons/codec/language/ColognePhonetic.class [new file with mode: 0644]
forester/java/classes/org/apache/commons/codec/language/DoubleMetaphone$DoubleMetaphoneResult.class [new file with mode: 0644]
forester/java/classes/org/apache/commons/codec/language/DoubleMetaphone.class [new file with mode: 0644]
forester/java/classes/org/apache/commons/codec/language/Metaphone.class [new file with mode: 0644]
forester/java/classes/org/apache/commons/codec/language/RefinedSoundex.class [new file with mode: 0644]
forester/java/classes/org/apache/commons/codec/language/Soundex.class [new file with mode: 0644]
forester/java/classes/org/apache/commons/codec/language/SoundexUtils.class [new file with mode: 0644]
forester/java/classes/org/apache/commons/codec/net/BCodec.class [new file with mode: 0644]
forester/java/classes/org/apache/commons/codec/net/QCodec.class [new file with mode: 0644]
forester/java/classes/org/apache/commons/codec/net/QuotedPrintableCodec.class [new file with mode: 0644]
forester/java/classes/org/apache/commons/codec/net/RFC1522Codec.class [new file with mode: 0644]
forester/java/classes/org/apache/commons/codec/net/URLCodec.class [new file with mode: 0644]
forester/java/classes/org/apache/commons/codec/net/Utils.class [new file with mode: 0644]
forester/java/classes/org/forester/analysis/AncestralTaxonomyInference.class [new file with mode: 0644]
forester/java/classes/org/forester/analysis/AncestralTaxonomyInferenceException.class [new file with mode: 0644]
forester/java/classes/org/forester/analysis/TaxonomyDataManager$1.class [new file with mode: 0644]
forester/java/classes/org/forester/analysis/TaxonomyDataManager$QUERY_TYPE.class [new file with mode: 0644]
forester/java/classes/org/forester/analysis/TaxonomyDataManager.class [new file with mode: 0644]
forester/java/classes/org/forester/application/annotator.class [new file with mode: 0644]
forester/java/classes/org/forester/application/check_fasta.class [new file with mode: 0644]
forester/java/classes/org/forester/application/confadd.class [new file with mode: 0644]
forester/java/classes/org/forester/application/count_support.class [new file with mode: 0644]
forester/java/classes/org/forester/application/decorator.class [new file with mode: 0644]
forester/java/classes/org/forester/application/decoratorX.class [new file with mode: 0644]
forester/java/classes/org/forester/application/dom_dup.class [new file with mode: 0644]
forester/java/classes/org/forester/application/gene_tree_preprocess.class [new file with mode: 0644]
forester/java/classes/org/forester/application/goac.class [new file with mode: 0644]
forester/java/classes/org/forester/application/gsdi.class [new file with mode: 0644]
forester/java/classes/org/forester/application/mcc.class [new file with mode: 0644]
forester/java/classes/org/forester/application/meta_ontologizer.class [new file with mode: 0644]
forester/java/classes/org/forester/application/msa_compactor.class [new file with mode: 0644]
forester/java/classes/org/forester/application/nj.class [new file with mode: 0644]
forester/java/classes/org/forester/application/obo_tool.class [new file with mode: 0644]
forester/java/classes/org/forester/application/pccx.class [new file with mode: 0644]
forester/java/classes/org/forester/application/pfam2go_extractor.class [new file with mode: 0644]
forester/java/classes/org/forester/application/pfam_go.class [new file with mode: 0644]
forester/java/classes/org/forester/application/pfamacc2go.class [new file with mode: 0644]
forester/java/classes/org/forester/application/pfamacc2pfamid.class [new file with mode: 0644]
forester/java/classes/org/forester/application/phylostrip.class [new file with mode: 0644]
forester/java/classes/org/forester/application/phyloxml_converter.class [new file with mode: 0644]
forester/java/classes/org/forester/application/rio$1.class [new file with mode: 0644]
forester/java/classes/org/forester/application/rio.class [new file with mode: 0644]
forester/java/classes/org/forester/application/support_statistics.class [new file with mode: 0644]
forester/java/classes/org/forester/application/support_transfer.class [new file with mode: 0644]
forester/java/classes/org/forester/application/surfacing$1.class [new file with mode: 0644]
forester/java/classes/org/forester/application/surfacing.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/AptxUtil$GraphicsExportType.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/AptxUtil.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/Archaeopteryx.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/ArchaeopteryxA.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/ArchaeopteryxE$1.class [new file with mode: 0644]
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forester/java/classes/org/forester/archaeopteryx/ArchaeopteryxE$3.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/ArchaeopteryxE.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/ColorSchemeChooser$1.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/ColorSchemeChooser$2.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/ColorSchemeChooser$3.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/ColorSchemeChooser.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/Configuration$EXT_NODE_DATA_RETURN_ON.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/Configuration$TRIPLET.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/Configuration$UI.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/Configuration.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/Constants.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/ControlPanel$1.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/ControlPanel$2.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/ControlPanel$3.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/ControlPanel$4.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/ControlPanel$5.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/ControlPanel$6.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/ControlPanel$7.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/ControlPanel$8.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/ControlPanel$NodeClickAction.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/ControlPanel.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/DefaultFilter.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/FontChooser.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/GraphicsFileFilter.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/MainFrame$1.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/MainFrame$2.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/MainFrame.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/MainFrameApplet$1.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/MainFrameApplet$2.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/MainFrameApplet$3.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/MainFrameApplet.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/MainFrameApplication$1.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/MainFrameApplication$2.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/MainFrameApplication$3.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/MainFrameApplication$4.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/MainFrameApplication.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/MainPanel$1.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/MainPanel$2.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/MainPanel$3.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/MainPanel$4.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/MainPanel$5.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/MainPanel.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/MainPanelApplets.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/MouseListener.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/MsaFileFilter.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/NHFilter.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/NHXFilter.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/NexusFilter.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/NodeEditPanel$1.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/NodeEditPanel$2.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/NodeEditPanel$3.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/NodeEditPanel$PHYLOXML_TAG.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/NodeEditPanel$TagNumber.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/NodeEditPanel.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/NodeFrame$1.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/NodeFrame$2.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/NodeFrame.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/NodePanel.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/Options$CLADOGRAM_TYPE.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/Options$NODE_LABEL_DIRECTION.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/Options$OVERVIEW_PLACEMENT_TYPE.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/Options$PHYLOGENY_GRAPHICS_TYPE.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/Options.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/PdfExporter.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/PdfFilter.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/Printer.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/SequencesFileFilter.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/TextFrame$1.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/TextFrame.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/TolFilter.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/TreeColorSet.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/TreeFontSet.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/TreePanel$1.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/TreePanel$2.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/TreePanel$3.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/TreePanel$NodeColorizationActionListener.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/TreePanel$SubtreeColorizationActionListener.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/TreePanel.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/TreePanelUtil.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/UrlTreeReader$1.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/UrlTreeReader.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/XMLFilter.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/phylogeny/data/RenderableDomainArchitecture.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/phylogeny/data/RenderablePhylogenyData.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/phylogeny/data/RenderableVector.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/tools/AncestralTaxonomyInferrer.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/tools/Blast.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/tools/ImageLoader.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/tools/InferenceManager.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/tools/PhyloInferenceDialog$1.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/tools/PhyloInferenceDialog.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/tools/PhylogeneticInferenceOptions.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/tools/PhylogeneticInferrer$1.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/tools/PhylogeneticInferrer$MSA_PRG.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/tools/PhylogeneticInferrer.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/tools/ProcessPool.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/tools/ProcessRunning.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/tools/RunnableProcess.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/tools/SequenceDataRetriver.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/webservices/BasicPhylogeniesWebserviceClient.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/webservices/PhylogeniesWebserviceClient.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/webservices/WebserviceUtil.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/webservices/WebservicesManager$WsPhylogenyFormat.class [new file with mode: 0644]
forester/java/classes/org/forester/archaeopteryx/webservices/WebservicesManager.class [new file with mode: 0644]
forester/java/classes/org/forester/datastructures/IntMatrix.class [new file with mode: 0644]
forester/java/classes/org/forester/datastructures/Queue.class [new file with mode: 0644]
forester/java/classes/org/forester/development/AbstractRenderer.class [new file with mode: 0644]
forester/java/classes/org/forester/development/DevelopmentTools.class [new file with mode: 0644]
forester/java/classes/org/forester/development/Hello3d.class [new file with mode: 0644]
forester/java/classes/org/forester/development/HmmerRest.class [new file with mode: 0644]
forester/java/classes/org/forester/development/MsaRenderer$1.class [new file with mode: 0644]
forester/java/classes/org/forester/development/MsaRenderer$2.class [new file with mode: 0644]
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forester/java/classes/org/forester/development/ResidueRenderer.class [new file with mode: 0644]
forester/java/classes/org/forester/development/Test.class [new file with mode: 0644]
forester/java/classes/org/forester/development/Time.class [new file with mode: 0644]
forester/java/classes/org/forester/development/neTest$DoublePointer.class [new file with mode: 0644]
forester/java/classes/org/forester/development/neTest.class [new file with mode: 0644]
forester/java/classes/org/forester/evoinference/TestPhylogenyReconstruction.class [new file with mode: 0644]
forester/java/classes/org/forester/evoinference/distance/NeighborJoining.class [new file with mode: 0644]
forester/java/classes/org/forester/evoinference/distance/NeighborJoiningF.class [new file with mode: 0644]
forester/java/classes/org/forester/evoinference/distance/NeighborJoiningR.class [new file with mode: 0644]
forester/java/classes/org/forester/evoinference/distance/PairwiseDistanceCalculator$PWD_DISTANCE_METHOD.class [new file with mode: 0644]
forester/java/classes/org/forester/evoinference/distance/PairwiseDistanceCalculator.class [new file with mode: 0644]
forester/java/classes/org/forester/evoinference/distance/Sarray.class [new file with mode: 0644]
forester/java/classes/org/forester/evoinference/distance/Sset.class [new file with mode: 0644]
forester/java/classes/org/forester/evoinference/matrix/character/BasicCharacterStateMatrix$1.class [new file with mode: 0644]
forester/java/classes/org/forester/evoinference/matrix/character/BasicCharacterStateMatrix.class [new file with mode: 0644]
forester/java/classes/org/forester/evoinference/matrix/character/CharacterStateMatrix$1.class [new file with mode: 0644]
forester/java/classes/org/forester/evoinference/matrix/character/CharacterStateMatrix$BinaryStates.class [new file with mode: 0644]
forester/java/classes/org/forester/evoinference/matrix/character/CharacterStateMatrix$Format.class [new file with mode: 0644]
forester/java/classes/org/forester/evoinference/matrix/character/CharacterStateMatrix$GainLossStates.class [new file with mode: 0644]
forester/java/classes/org/forester/evoinference/matrix/character/CharacterStateMatrix$NucleotideStates.class [new file with mode: 0644]
forester/java/classes/org/forester/evoinference/matrix/character/CharacterStateMatrix.class [new file with mode: 0644]
forester/java/classes/org/forester/evoinference/matrix/distance/BasicSymmetricalDistanceMatrix$1.class [new file with mode: 0644]
forester/java/classes/org/forester/evoinference/matrix/distance/BasicSymmetricalDistanceMatrix.class [new file with mode: 0644]
forester/java/classes/org/forester/evoinference/matrix/distance/DistanceMatrix$Format.class [new file with mode: 0644]
forester/java/classes/org/forester/evoinference/matrix/distance/DistanceMatrix.class [new file with mode: 0644]
forester/java/classes/org/forester/evoinference/parsimony/DolloParsimony.class [new file with mode: 0644]
forester/java/classes/org/forester/evoinference/parsimony/FitchParsimony.class [new file with mode: 0644]
forester/java/classes/org/forester/evoinference/parsimony/SankoffParsimony.class [new file with mode: 0644]
forester/java/classes/org/forester/evoinference/tools/BootstrapResampler.class [new file with mode: 0644]
forester/java/classes/org/forester/go/BasicGoRelationship$1.class [new file with mode: 0644]
forester/java/classes/org/forester/go/BasicGoRelationship.class [new file with mode: 0644]
forester/java/classes/org/forester/go/BasicGoSubset$1.class [new file with mode: 0644]
forester/java/classes/org/forester/go/BasicGoSubset.class [new file with mode: 0644]
forester/java/classes/org/forester/go/BasicGoTerm.class [new file with mode: 0644]
forester/java/classes/org/forester/go/BasicGoXRef$1.class [new file with mode: 0644]
forester/java/classes/org/forester/go/BasicGoXRef.class [new file with mode: 0644]
forester/java/classes/org/forester/go/GoId.class [new file with mode: 0644]
forester/java/classes/org/forester/go/GoNameSpace$1.class [new file with mode: 0644]
forester/java/classes/org/forester/go/GoNameSpace$GoNamespaceType.class [new file with mode: 0644]
forester/java/classes/org/forester/go/GoNameSpace.class [new file with mode: 0644]
forester/java/classes/org/forester/go/GoRelationship$Type.class [new file with mode: 0644]
forester/java/classes/org/forester/go/GoRelationship.class [new file with mode: 0644]
forester/java/classes/org/forester/go/GoSubset$Type.class [new file with mode: 0644]
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forester/java/classes/org/forester/go/GoTerm.class [new file with mode: 0644]
forester/java/classes/org/forester/go/GoUtils.class [new file with mode: 0644]
forester/java/classes/org/forester/go/GoXRef$Type.class [new file with mode: 0644]
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forester/java/classes/org/forester/go/Mapping.class [new file with mode: 0644]
forester/java/classes/org/forester/go/OBOparser$1.class [new file with mode: 0644]
forester/java/classes/org/forester/go/OBOparser$ReturnType.class [new file with mode: 0644]
forester/java/classes/org/forester/go/OBOparser.class [new file with mode: 0644]
forester/java/classes/org/forester/go/PfamToGoMapping.class [new file with mode: 0644]
forester/java/classes/org/forester/go/PfamToGoParser.class [new file with mode: 0644]
forester/java/classes/org/forester/go/TestGo.class [new file with mode: 0644]
forester/java/classes/org/forester/go/etc/MetaOntologizer$1.class [new file with mode: 0644]
forester/java/classes/org/forester/go/etc/MetaOntologizer.class [new file with mode: 0644]
forester/java/classes/org/forester/go/etc/OntologizerResult$TYPE.class [new file with mode: 0644]
forester/java/classes/org/forester/go/etc/OntologizerResult.class [new file with mode: 0644]
forester/java/classes/org/forester/io/parsers/FastaParser.class [new file with mode: 0644]
forester/java/classes/org/forester/io/parsers/GeneralMsaParser.class [new file with mode: 0644]
forester/java/classes/org/forester/io/parsers/HmmPfamOutputParser$FilterType.class [new file with mode: 0644]
forester/java/classes/org/forester/io/parsers/HmmPfamOutputParser$ReturnType.class [new file with mode: 0644]
forester/java/classes/org/forester/io/parsers/HmmPfamOutputParser.class [new file with mode: 0644]
forester/java/classes/org/forester/io/parsers/HmmscanPerDomainTableParser$FilterType.class [new file with mode: 0644]
forester/java/classes/org/forester/io/parsers/HmmscanPerDomainTableParser$INDIVIDUAL_SCORE_CUTOFF.class [new file with mode: 0644]
forester/java/classes/org/forester/io/parsers/HmmscanPerDomainTableParser$ReturnType.class [new file with mode: 0644]
forester/java/classes/org/forester/io/parsers/HmmscanPerDomainTableParser.class [new file with mode: 0644]
forester/java/classes/org/forester/io/parsers/IteratingPhylogenyParser.class [new file with mode: 0644]
forester/java/classes/org/forester/io/parsers/PhylogenyParser.class [new file with mode: 0644]
forester/java/classes/org/forester/io/parsers/SymmetricalDistanceMatrixParser$1.class [new file with mode: 0644]
forester/java/classes/org/forester/io/parsers/SymmetricalDistanceMatrixParser$InputMatrixType.class [new file with mode: 0644]
forester/java/classes/org/forester/io/parsers/SymmetricalDistanceMatrixParser.class [new file with mode: 0644]
forester/java/classes/org/forester/io/parsers/nexus/NexusBinaryStatesMatrixParser.class [new file with mode: 0644]
forester/java/classes/org/forester/io/parsers/nexus/NexusCharactersParser.class [new file with mode: 0644]
forester/java/classes/org/forester/io/parsers/nexus/NexusConstants.class [new file with mode: 0644]
forester/java/classes/org/forester/io/parsers/nexus/NexusFormatException.class [new file with mode: 0644]
forester/java/classes/org/forester/io/parsers/nexus/NexusPhylogeniesParser.class [new file with mode: 0644]
forester/java/classes/org/forester/io/parsers/nexus/PaupLogParser.class [new file with mode: 0644]
forester/java/classes/org/forester/io/parsers/nhx/NHXFormatException.class [new file with mode: 0644]
forester/java/classes/org/forester/io/parsers/nhx/NHXParser$TAXONOMY_EXTRACTION.class [new file with mode: 0644]
forester/java/classes/org/forester/io/parsers/nhx/NHXParser.class [new file with mode: 0644]
forester/java/classes/org/forester/io/parsers/nhx/NHXtags.class [new file with mode: 0644]
forester/java/classes/org/forester/io/parsers/phyloxml/PhyloXmlDataFormatException.class [new file with mode: 0644]
forester/java/classes/org/forester/io/parsers/phyloxml/PhyloXmlException.class [new file with mode: 0644]
forester/java/classes/org/forester/io/parsers/phyloxml/PhyloXmlHandler.class [new file with mode: 0644]
forester/java/classes/org/forester/io/parsers/phyloxml/PhyloXmlMapping.class [new file with mode: 0644]
forester/java/classes/org/forester/io/parsers/phyloxml/PhyloXmlParser$1.class [new file with mode: 0644]
forester/java/classes/org/forester/io/parsers/phyloxml/PhyloXmlParser$PhyloXmlParserErrorHandler.class [new file with mode: 0644]
forester/java/classes/org/forester/io/parsers/phyloxml/PhyloXmlParser.class [new file with mode: 0644]
forester/java/classes/org/forester/io/parsers/phyloxml/PhyloXmlUtil.class [new file with mode: 0644]
forester/java/classes/org/forester/io/parsers/phyloxml/XmlElement.class [new file with mode: 0644]
forester/java/classes/org/forester/io/parsers/phyloxml/data/AccessionParser.class [new file with mode: 0644]
forester/java/classes/org/forester/io/parsers/phyloxml/data/AnnotationParser.class [new file with mode: 0644]
forester/java/classes/org/forester/io/parsers/phyloxml/data/BinaryCharactersParser.class [new file with mode: 0644]
forester/java/classes/org/forester/io/parsers/phyloxml/data/BranchWidthParser.class [new file with mode: 0644]
forester/java/classes/org/forester/io/parsers/phyloxml/data/ColorParser.class [new file with mode: 0644]
forester/java/classes/org/forester/io/parsers/phyloxml/data/ConfidenceParser.class [new file with mode: 0644]
forester/java/classes/org/forester/io/parsers/phyloxml/data/DateParser.class [new file with mode: 0644]
forester/java/classes/org/forester/io/parsers/phyloxml/data/DistributionParser.class [new file with mode: 0644]
forester/java/classes/org/forester/io/parsers/phyloxml/data/DomainArchitectureParser.class [new file with mode: 0644]
forester/java/classes/org/forester/io/parsers/phyloxml/data/EventParser.class [new file with mode: 0644]
forester/java/classes/org/forester/io/parsers/phyloxml/data/IdentifierParser.class [new file with mode: 0644]
forester/java/classes/org/forester/io/parsers/phyloxml/data/PhylogenyDataPhyloXmlParser.class [new file with mode: 0644]
forester/java/classes/org/forester/io/parsers/phyloxml/data/PointParser.class [new file with mode: 0644]
forester/java/classes/org/forester/io/parsers/phyloxml/data/PolygonParser.class [new file with mode: 0644]
forester/java/classes/org/forester/io/parsers/phyloxml/data/PropertyParser.class [new file with mode: 0644]
forester/java/classes/org/forester/io/parsers/phyloxml/data/ProteinDomainParser.class [new file with mode: 0644]
forester/java/classes/org/forester/io/parsers/phyloxml/data/ReferenceParser.class [new file with mode: 0644]
forester/java/classes/org/forester/io/parsers/phyloxml/data/SequenceParser.class [new file with mode: 0644]
forester/java/classes/org/forester/io/parsers/phyloxml/data/SequenceRelationParser.class [new file with mode: 0644]
forester/java/classes/org/forester/io/parsers/phyloxml/data/TaxonomyParser.class [new file with mode: 0644]
forester/java/classes/org/forester/io/parsers/phyloxml/data/UriParser.class [new file with mode: 0644]
forester/java/classes/org/forester/io/parsers/tol/TolParser$1.class [new file with mode: 0644]
forester/java/classes/org/forester/io/parsers/tol/TolParser$TolParserErrorHandler.class [new file with mode: 0644]
forester/java/classes/org/forester/io/parsers/tol/TolParser.class [new file with mode: 0644]
forester/java/classes/org/forester/io/parsers/tol/TolXmlHandler.class [new file with mode: 0644]
forester/java/classes/org/forester/io/parsers/tol/TolXmlMapping.class [new file with mode: 0644]
forester/java/classes/org/forester/io/parsers/util/ParserUtils.class [new file with mode: 0644]
forester/java/classes/org/forester/io/parsers/util/PhylogenyParserException.class [new file with mode: 0644]
forester/java/classes/org/forester/io/writers/PhyloXmlNodeWriter.class [new file with mode: 0644]
forester/java/classes/org/forester/io/writers/PhylogenyWriter$FORMAT.class [new file with mode: 0644]
forester/java/classes/org/forester/io/writers/PhylogenyWriter.class [new file with mode: 0644]
forester/java/classes/org/forester/io/writers/SequenceWriter$1.class [new file with mode: 0644]
forester/java/classes/org/forester/io/writers/SequenceWriter$SEQ_FORMAT.class [new file with mode: 0644]
forester/java/classes/org/forester/io/writers/SequenceWriter.class [new file with mode: 0644]
forester/java/classes/org/forester/msa/BasicMsa$1.class [new file with mode: 0644]
forester/java/classes/org/forester/msa/BasicMsa.class [new file with mode: 0644]
forester/java/classes/org/forester/msa/ClustalOmega.class [new file with mode: 0644]
forester/java/classes/org/forester/msa/DeleteableMsa.class [new file with mode: 0644]
forester/java/classes/org/forester/msa/Mafft.class [new file with mode: 0644]
forester/java/classes/org/forester/msa/Msa$MSA_FORMAT.class [new file with mode: 0644]
forester/java/classes/org/forester/msa/Msa.class [new file with mode: 0644]
forester/java/classes/org/forester/msa/MsaFormatException.class [new file with mode: 0644]
forester/java/classes/org/forester/msa/MsaInferrer.class [new file with mode: 0644]
forester/java/classes/org/forester/msa/MsaMethods.class [new file with mode: 0644]
forester/java/classes/org/forester/msa/ResampleableMsa.class [new file with mode: 0644]
forester/java/classes/org/forester/msa_compactor/Chart.class [new file with mode: 0644]
forester/java/classes/org/forester/msa_compactor/GapContribution.class [new file with mode: 0644]
forester/java/classes/org/forester/msa_compactor/MsaCompactor$1.class [new file with mode: 0644]
forester/java/classes/org/forester/msa_compactor/MsaCompactor.class [new file with mode: 0644]
forester/java/classes/org/forester/msa_compactor/MsaProperties.class [new file with mode: 0644]
forester/java/classes/org/forester/pccx/BasicExternalNodeBasedCoverageExtender.class [new file with mode: 0644]
forester/java/classes/org/forester/pccx/BranchCountingBasedScoringMethod.class [new file with mode: 0644]
forester/java/classes/org/forester/pccx/BranchLengthBasedScoringMethod.class [new file with mode: 0644]
forester/java/classes/org/forester/pccx/Coverage.class [new file with mode: 0644]
forester/java/classes/org/forester/pccx/CoverageCalculationMethod.class [new file with mode: 0644]
forester/java/classes/org/forester/pccx/CoverageCalculationOptions.class [new file with mode: 0644]
forester/java/classes/org/forester/pccx/CoverageCalculator.class [new file with mode: 0644]
forester/java/classes/org/forester/pccx/CoverageExtender.class [new file with mode: 0644]
forester/java/classes/org/forester/pccx/ExternalNodeBasedCoverage.class [new file with mode: 0644]
forester/java/classes/org/forester/pccx/ExternalNodeBasedCoverageMethod.class [new file with mode: 0644]
forester/java/classes/org/forester/pccx/ExternalNodeBasedCoverageMethodOptions.class [new file with mode: 0644]
forester/java/classes/org/forester/pccx/LogBranchLengthBasedScoringMethod.class [new file with mode: 0644]
forester/java/classes/org/forester/pccx/ModelingUtils.class [new file with mode: 0644]
forester/java/classes/org/forester/pccx/ScoringMethodForExternalNode.class [new file with mode: 0644]
forester/java/classes/org/forester/pccx/TestPccx.class [new file with mode: 0644]
forester/java/classes/org/forester/phylogeny/Phylogeny.class [new file with mode: 0644]
forester/java/classes/org/forester/phylogeny/PhylogenyBranch.class [new file with mode: 0644]
forester/java/classes/org/forester/phylogeny/PhylogenyMethods$1.class [new file with mode: 0644]
forester/java/classes/org/forester/phylogeny/PhylogenyMethods$1PhylogenyNodeSortNodeNamePriority.class [new file with mode: 0644]
forester/java/classes/org/forester/phylogeny/PhylogenyMethods$1PhylogenyNodeSortSequencePriority.class [new file with mode: 0644]
forester/java/classes/org/forester/phylogeny/PhylogenyMethods$1PhylogenyNodeSortTaxonomyPriority.class [new file with mode: 0644]
forester/java/classes/org/forester/phylogeny/PhylogenyMethods$DESCENDANT_SORT_PRIORITY.class [new file with mode: 0644]
forester/java/classes/org/forester/phylogeny/PhylogenyMethods$PhylogenyNodeField.class [new file with mode: 0644]
forester/java/classes/org/forester/phylogeny/PhylogenyMethods.class [new file with mode: 0644]
forester/java/classes/org/forester/phylogeny/PhylogenyNode$NH_CONVERSION_SUPPORT_VALUE_STYLE.class [new file with mode: 0644]
forester/java/classes/org/forester/phylogeny/PhylogenyNode.class [new file with mode: 0644]
forester/java/classes/org/forester/phylogeny/data/Accession$1.class [new file with mode: 0644]
forester/java/classes/org/forester/phylogeny/data/Accession$Source.class [new file with mode: 0644]
forester/java/classes/org/forester/phylogeny/data/Accession.class [new file with mode: 0644]
forester/java/classes/org/forester/phylogeny/data/Annotation.class [new file with mode: 0644]
forester/java/classes/org/forester/phylogeny/data/BinaryCharacters.class [new file with mode: 0644]
forester/java/classes/org/forester/phylogeny/data/BranchColor.class [new file with mode: 0644]
forester/java/classes/org/forester/phylogeny/data/BranchData.class [new file with mode: 0644]
forester/java/classes/org/forester/phylogeny/data/BranchWidth.class [new file with mode: 0644]
forester/java/classes/org/forester/phylogeny/data/Confidence.class [new file with mode: 0644]
forester/java/classes/org/forester/phylogeny/data/Date.class [new file with mode: 0644]
forester/java/classes/org/forester/phylogeny/data/Distribution.class [new file with mode: 0644]
forester/java/classes/org/forester/phylogeny/data/DomainArchitecture.class [new file with mode: 0644]
forester/java/classes/org/forester/phylogeny/data/Event$EventType.class [new file with mode: 0644]
forester/java/classes/org/forester/phylogeny/data/Event.class [new file with mode: 0644]
forester/java/classes/org/forester/phylogeny/data/Identifier.class [new file with mode: 0644]
forester/java/classes/org/forester/phylogeny/data/MultipleUris.class [new file with mode: 0644]
forester/java/classes/org/forester/phylogeny/data/NodeData$NODE_DATA.class [new file with mode: 0644]
forester/java/classes/org/forester/phylogeny/data/NodeData.class [new file with mode: 0644]
forester/java/classes/org/forester/phylogeny/data/NodeVisualData$FontType.class [new file with mode: 0644]
forester/java/classes/org/forester/phylogeny/data/NodeVisualData$NodeFill.class [new file with mode: 0644]
forester/java/classes/org/forester/phylogeny/data/NodeVisualData$NodeShape.class [new file with mode: 0644]
forester/java/classes/org/forester/phylogeny/data/NodeVisualData.class [new file with mode: 0644]
forester/java/classes/org/forester/phylogeny/data/PhylogenyData.class [new file with mode: 0644]
forester/java/classes/org/forester/phylogeny/data/PhylogenyDataUtil.class [new file with mode: 0644]
forester/java/classes/org/forester/phylogeny/data/Point.class [new file with mode: 0644]
forester/java/classes/org/forester/phylogeny/data/Polygon.class [new file with mode: 0644]
forester/java/classes/org/forester/phylogeny/data/PropertiesMap.class [new file with mode: 0644]
forester/java/classes/org/forester/phylogeny/data/Property$1.class [new file with mode: 0644]
forester/java/classes/org/forester/phylogeny/data/Property$AppliesTo$1.class [new file with mode: 0644]
forester/java/classes/org/forester/phylogeny/data/Property$AppliesTo$2.class [new file with mode: 0644]
forester/java/classes/org/forester/phylogeny/data/Property$AppliesTo$3.class [new file with mode: 0644]
forester/java/classes/org/forester/phylogeny/data/Property$AppliesTo$4.class [new file with mode: 0644]
forester/java/classes/org/forester/phylogeny/data/Property$AppliesTo$5.class [new file with mode: 0644]
forester/java/classes/org/forester/phylogeny/data/Property$AppliesTo$6.class [new file with mode: 0644]
forester/java/classes/org/forester/phylogeny/data/Property$AppliesTo.class [new file with mode: 0644]
forester/java/classes/org/forester/phylogeny/data/Property.class [new file with mode: 0644]
forester/java/classes/org/forester/phylogeny/data/ProteinDomain.class [new file with mode: 0644]
forester/java/classes/org/forester/phylogeny/data/Reference.class [new file with mode: 0644]
forester/java/classes/org/forester/phylogeny/data/Sequence.class [new file with mode: 0644]
forester/java/classes/org/forester/phylogeny/data/SequenceRelation$SEQUENCE_RELATION_TYPE.class [new file with mode: 0644]
forester/java/classes/org/forester/phylogeny/data/SequenceRelation.class [new file with mode: 0644]
forester/java/classes/org/forester/phylogeny/data/Taxonomy.class [new file with mode: 0644]
forester/java/classes/org/forester/phylogeny/data/Uri.class [new file with mode: 0644]
forester/java/classes/org/forester/phylogeny/factories/ParserBasedPhylogenyFactory.class [new file with mode: 0644]
forester/java/classes/org/forester/phylogeny/factories/PhylogenyFactory.class [new file with mode: 0644]
forester/java/classes/org/forester/phylogeny/iterators/ExternalForwardIterator.class [new file with mode: 0644]
forester/java/classes/org/forester/phylogeny/iterators/LevelOrderTreeIterator.class [new file with mode: 0644]
forester/java/classes/org/forester/phylogeny/iterators/PhylogenyNodeIterator.class [new file with mode: 0644]
forester/java/classes/org/forester/phylogeny/iterators/PostOrderStackObject.class [new file with mode: 0644]
forester/java/classes/org/forester/phylogeny/iterators/PostorderTreeIterator.class [new file with mode: 0644]
forester/java/classes/org/forester/phylogeny/iterators/PreorderTreeIterator.class [new file with mode: 0644]
forester/java/classes/org/forester/protein/BasicDomain.class [new file with mode: 0644]
forester/java/classes/org/forester/protein/BasicProtein$1.class [new file with mode: 0644]
forester/java/classes/org/forester/protein/BasicProtein.class [new file with mode: 0644]
forester/java/classes/org/forester/protein/BinaryDomainCombination$DomainCombinationType.class [new file with mode: 0644]
forester/java/classes/org/forester/protein/BinaryDomainCombination$OutputFormat.class [new file with mode: 0644]
forester/java/classes/org/forester/protein/BinaryDomainCombination.class [new file with mode: 0644]
forester/java/classes/org/forester/protein/Domain.class [new file with mode: 0644]
forester/java/classes/org/forester/protein/Protein.class [new file with mode: 0644]
forester/java/classes/org/forester/protein/ProteinId.class [new file with mode: 0644]
forester/java/classes/org/forester/rio/RIO$1.class [new file with mode: 0644]
forester/java/classes/org/forester/rio/RIO$REROOTING.class [new file with mode: 0644]
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forester/java/classes/org/forester/rio/RIOException.class [new file with mode: 0644]
forester/java/classes/org/forester/rio/TestRIO.class [new file with mode: 0644]
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forester/java/classes/org/forester/sdi/GSDIsummaryResult.class [new file with mode: 0644]
forester/java/classes/org/forester/sdi/NodesLinkingResult.class [new file with mode: 0644]
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forester/java/classes/org/forester/sdi/SDIutil$ALGORITHM.class [new file with mode: 0644]
forester/java/classes/org/forester/sdi/SDIutil$TaxonomyComparisonBase$1.class [new file with mode: 0644]
forester/java/classes/org/forester/sdi/SDIutil$TaxonomyComparisonBase$2.class [new file with mode: 0644]
forester/java/classes/org/forester/sdi/SDIutil$TaxonomyComparisonBase$3.class [new file with mode: 0644]
forester/java/classes/org/forester/sdi/SDIutil$TaxonomyComparisonBase.class [new file with mode: 0644]
forester/java/classes/org/forester/sdi/SDIutil.class [new file with mode: 0644]
forester/java/classes/org/forester/sdi/TestGSDI.class [new file with mode: 0644]
forester/java/classes/org/forester/sequence/BasicSequence.class [new file with mode: 0644]
forester/java/classes/org/forester/sequence/Sequence$TYPE.class [new file with mode: 0644]
forester/java/classes/org/forester/sequence/Sequence.class [new file with mode: 0644]
forester/java/classes/org/forester/species/BasicSpecies.class [new file with mode: 0644]
forester/java/classes/org/forester/species/Species.class [new file with mode: 0644]
forester/java/classes/org/forester/surfacing/AdjactantDirectedBinaryDomainCombination.class [new file with mode: 0644]
forester/java/classes/org/forester/surfacing/AdjactantDirectedCombinableDomains.class [new file with mode: 0644]
forester/java/classes/org/forester/surfacing/BasicBinaryDomainCombination$1.class [new file with mode: 0644]
forester/java/classes/org/forester/surfacing/BasicBinaryDomainCombination.class [new file with mode: 0644]
forester/java/classes/org/forester/surfacing/BasicCombinableDomains.class [new file with mode: 0644]
forester/java/classes/org/forester/surfacing/BasicDomainSimilarityCalculator.class [new file with mode: 0644]
forester/java/classes/org/forester/surfacing/BasicGenomeWideCombinableDomains$1.class [new file with mode: 0644]
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forester/java/classes/org/forester/surfacing/BasicGenomeWideCombinableDomains$3.class [new file with mode: 0644]
forester/java/classes/org/forester/surfacing/BasicGenomeWideCombinableDomains.class [new file with mode: 0644]
forester/java/classes/org/forester/surfacing/CombinableDomains.class [new file with mode: 0644]
forester/java/classes/org/forester/surfacing/CombinationsBasedPairwiseDomainSimilarity.class [new file with mode: 0644]
forester/java/classes/org/forester/surfacing/CombinationsBasedPairwiseDomainSimilarityCalculator.class [new file with mode: 0644]
forester/java/classes/org/forester/surfacing/CountsBasedPairwiseDomainSimilarity.class [new file with mode: 0644]
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forester/java/classes/org/forester/surfacing/DirectedCombinableDomains.class [new file with mode: 0644]
forester/java/classes/org/forester/surfacing/DomainArchitectureBasedGenomeSimilarityCalculator.class [new file with mode: 0644]
forester/java/classes/org/forester/surfacing/DomainCountsBasedPairwiseSimilarityCalculator.class [new file with mode: 0644]
forester/java/classes/org/forester/surfacing/DomainCountsDifferenceUtil$1.class [new file with mode: 0644]
forester/java/classes/org/forester/surfacing/DomainCountsDifferenceUtil$COPY_CALCULATION_MODE.class [new file with mode: 0644]
forester/java/classes/org/forester/surfacing/DomainCountsDifferenceUtil.class [new file with mode: 0644]
forester/java/classes/org/forester/surfacing/DomainLengths.class [new file with mode: 0644]
forester/java/classes/org/forester/surfacing/DomainLengthsTable.class [new file with mode: 0644]
forester/java/classes/org/forester/surfacing/DomainParsimonyCalculator.class [new file with mode: 0644]
forester/java/classes/org/forester/surfacing/DomainSimilarity$1.class [new file with mode: 0644]
forester/java/classes/org/forester/surfacing/DomainSimilarity$2.class [new file with mode: 0644]
forester/java/classes/org/forester/surfacing/DomainSimilarity$DomainSimilarityScoring.class [new file with mode: 0644]
forester/java/classes/org/forester/surfacing/DomainSimilarity$DomainSimilaritySortField.class [new file with mode: 0644]
forester/java/classes/org/forester/surfacing/DomainSimilarity$PRINT_OPTION.class [new file with mode: 0644]
forester/java/classes/org/forester/surfacing/DomainSimilarity$ValueComparator.class [new file with mode: 0644]
forester/java/classes/org/forester/surfacing/DomainSimilarity.class [new file with mode: 0644]
forester/java/classes/org/forester/surfacing/DomainSimilarityCalculator$Detailedness.class [new file with mode: 0644]
forester/java/classes/org/forester/surfacing/DomainSimilarityCalculator$GoAnnotationOutput.class [new file with mode: 0644]
forester/java/classes/org/forester/surfacing/DomainSimilarityCalculator.class [new file with mode: 0644]
forester/java/classes/org/forester/surfacing/GenomeWideCombinableDomains$GenomeWideCombinableDomainsSortOrder.class [new file with mode: 0644]
forester/java/classes/org/forester/surfacing/GenomeWideCombinableDomains.class [new file with mode: 0644]
forester/java/classes/org/forester/surfacing/MappingResults.class [new file with mode: 0644]
forester/java/classes/org/forester/surfacing/PairwiseDomainSimilarity.class [new file with mode: 0644]
forester/java/classes/org/forester/surfacing/PairwiseDomainSimilarityCalculator.class [new file with mode: 0644]
forester/java/classes/org/forester/surfacing/PairwiseGenomeComparator$1.class [new file with mode: 0644]
forester/java/classes/org/forester/surfacing/PairwiseGenomeComparator.class [new file with mode: 0644]
forester/java/classes/org/forester/surfacing/PrintableSpeciesSpecificDcData.class [new file with mode: 0644]
forester/java/classes/org/forester/surfacing/ProteinCountsBasedPairwiseDomainSimilarityCalculator.class [new file with mode: 0644]
forester/java/classes/org/forester/surfacing/SimpleDomain.class [new file with mode: 0644]
forester/java/classes/org/forester/surfacing/SpeciesSpecificDcData.class [new file with mode: 0644]
forester/java/classes/org/forester/surfacing/SurfacingConstants.class [new file with mode: 0644]
forester/java/classes/org/forester/surfacing/SurfacingUtil$1.class [new file with mode: 0644]
forester/java/classes/org/forester/surfacing/SurfacingUtil$2.class [new file with mode: 0644]
forester/java/classes/org/forester/surfacing/SurfacingUtil$DomainComparator.class [new file with mode: 0644]
forester/java/classes/org/forester/surfacing/SurfacingUtil.class [new file with mode: 0644]
forester/java/classes/org/forester/surfacing/TestSurfacing.class [new file with mode: 0644]
forester/java/classes/org/forester/test/Test.class [new file with mode: 0644]
forester/java/classes/org/forester/test/examples/Example1.class [new file with mode: 0644]
forester/java/classes/org/forester/test/examples/Example2.class [new file with mode: 0644]
forester/java/classes/org/forester/test/examples/Example3.class [new file with mode: 0644]
forester/java/classes/org/forester/test/examples/Example4.class [new file with mode: 0644]
forester/java/classes/org/forester/test/examples/Example5.class [new file with mode: 0644]
forester/java/classes/org/forester/tools/ConfidenceAssessor.class [new file with mode: 0644]
forester/java/classes/org/forester/tools/PhylogenyDecorator$1.class [new file with mode: 0644]
forester/java/classes/org/forester/tools/PhylogenyDecorator$FIELD.class [new file with mode: 0644]
forester/java/classes/org/forester/tools/PhylogenyDecorator.class [new file with mode: 0644]
forester/java/classes/org/forester/tools/SupportCount.class [new file with mode: 0644]
forester/java/classes/org/forester/tools/TreeSplitMatrix.class [new file with mode: 0644]
forester/java/classes/org/forester/util/AsciiHistogram.class [new file with mode: 0644]
forester/java/classes/org/forester/util/BasicDescriptiveStatistics.class [new file with mode: 0644]
forester/java/classes/org/forester/util/BasicTable.class [new file with mode: 0644]
forester/java/classes/org/forester/util/BasicTableParser.class [new file with mode: 0644]
forester/java/classes/org/forester/util/CommandLineArguments.class [new file with mode: 0644]
forester/java/classes/org/forester/util/CommandProcessBuilder.class [new file with mode: 0644]
forester/java/classes/org/forester/util/DescriptiveStatistics.class [new file with mode: 0644]
forester/java/classes/org/forester/util/EasyWriter.class [new file with mode: 0644]
forester/java/classes/org/forester/util/ExternalProgram.class [new file with mode: 0644]
forester/java/classes/org/forester/util/FailedConditionCheckException.class [new file with mode: 0644]
forester/java/classes/org/forester/util/ForesterConstants$PhylogeneticTreeFormats.class [new file with mode: 0644]
forester/java/classes/org/forester/util/ForesterConstants.class [new file with mode: 0644]
forester/java/classes/org/forester/util/ForesterUtil.class [new file with mode: 0644]
forester/java/classes/org/forester/util/GeneralTable.class [new file with mode: 0644]
forester/java/classes/org/forester/util/IllegalFormatUseException.class [new file with mode: 0644]
forester/java/classes/org/forester/util/SequenceAccessionTools.class [new file with mode: 0644]
forester/java/classes/org/forester/util/SystemCommandExecutor.class [new file with mode: 0644]
forester/java/classes/org/forester/util/TaxonomyColors.class [new file with mode: 0644]
forester/java/classes/org/forester/util/TaxonomyGroups.class [new file with mode: 0644]
forester/java/classes/org/forester/util/TaxonomyUtil.class [new file with mode: 0644]
forester/java/classes/org/forester/util/ThreadedStreamHandler.class [new file with mode: 0644]
forester/java/classes/org/forester/util/WindowsUtils$StreamReader.class [new file with mode: 0644]
forester/java/classes/org/forester/util/WindowsUtils.class [new file with mode: 0644]
forester/java/classes/org/forester/ws/hmmer/Test.class [new file with mode: 0644]
forester/java/classes/org/forester/ws/seqdb/EbiDbEntry.class [new file with mode: 0644]
forester/java/classes/org/forester/ws/seqdb/SequenceDatabaseEntry.class [new file with mode: 0644]
forester/java/classes/org/forester/ws/seqdb/SequenceDbWsTools.class [new file with mode: 0644]
forester/java/classes/org/forester/ws/seqdb/UniProtEntry.class [new file with mode: 0644]
forester/java/classes/org/forester/ws/seqdb/UniProtTaxonomy.class [new file with mode: 0644]
forester/java/classes/org/forester/ws/wabi/RestUtil.class [new file with mode: 0644]
forester/java/classes/org/forester/ws/wabi/TxSearch$RANKS.class [new file with mode: 0644]
forester/java/classes/org/forester/ws/wabi/TxSearch$TAX_NAME_CLASS.class [new file with mode: 0644]
forester/java/classes/org/forester/ws/wabi/TxSearch$TAX_RANK.class [new file with mode: 0644]
forester/java/classes/org/forester/ws/wabi/TxSearch.class [new file with mode: 0644]
forester/java/classes/org/forester/ws/wabi/WabiTools.class [new file with mode: 0644]
forester/java/classes/resources/phyloxml.xsd [new file with mode: 0644]
forester/java/classes/resources/synth_look_and_feel_1.xml [new file with mode: 0644]
forester/java/forester.jar
forester/java/src/org/forester/application/surfacing.java