Start merging of Laurens Code
authorjanengelhardt <engelhardt87@googlemail.com>
Mon, 23 May 2011 10:16:35 +0000 (12:16 +0200)
committerjanengelhardt <engelhardt87@googlemail.com>
Mon, 25 Jul 2011 12:58:31 +0000 (14:58 +0200)
commit323a457c9d0643be2406b6661246e8e988c0d0f6
treea84b6f89e88e9b35049f344a0d15684560870cc3
parent513e985e6781095eaafc3d9fa72c135325e8dd49
Start merging of Laurens Code

Change-Id: Ic7501daa6075363a8f725ba2c6784cedefa27207
26 files changed:
.classpath
.project
src/jalview/analysis/Rna.java [new file with mode: 0644]
src/jalview/appletgui/AppletJmol.java
src/jalview/datamodel/AlignmentAnnotation.java
src/jalview/datamodel/DBRefSource.java
src/jalview/gui/AlignFrame.java
src/jalview/gui/AnnotationPanel.java
src/jalview/gui/AppJmol.java
src/jalview/gui/Desktop.java
src/jalview/gui/PopupMenu.java
src/jalview/gui/RNAHelicesColourChooser.java [new file with mode: 0644]
src/jalview/io/AppletFormatAdapter.java
src/jalview/io/StockholmFile.java
src/jalview/jbgui/GAlignFrame.java
src/jalview/jbgui/GStructureViewer.java
src/jalview/schemes/ColourSchemeProperty.java
src/jalview/schemes/CovariationColourScheme.java [new file with mode: 0644]
src/jalview/schemes/PurinePyrimidineColourScheme.java [new file with mode: 0644]
src/jalview/schemes/RNAHelicesColour.java [new file with mode: 0644]
src/jalview/schemes/ResidueProperties.java
src/jalview/util/ColorUtils.java [new file with mode: 0644]
src/jalview/ws/SequenceFetcher.java
src/jalview/ws/dbsources/Pfam.java
src/jalview/ws/dbsources/PfamFull.java
src/jalview/ws/dbsources/PfamSeed.java