inprogress
authorcmzmasek@gmail.com <cmzmasek@gmail.com@ca865154-3058-d1c3-3e42-d8f55a55bdbd>
Wed, 6 Nov 2013 20:28:27 +0000 (20:28 +0000)
committercmzmasek@gmail.com <cmzmasek@gmail.com@ca865154-3058-d1c3-3e42-d8f55a55bdbd>
Wed, 6 Nov 2013 20:28:27 +0000 (20:28 +0000)
commit3d68fcd1fc4272b56546f78f3cbd437237af5cfa
tree2818672836e1913440fa39dbfea0a7ca96fd5923
parent3b5c2fab212d221196ed1734ee9c623f45310bb7
inprogress
24 files changed:
forester/java/src/org/forester/application/surfacing.java
forester/java/src/org/forester/surfacing/BasicBinaryDomainCombination.java
forester/java/src/org/forester/surfacing/BasicCombinableDomains.java
forester/java/src/org/forester/surfacing/BasicDomainSimilarityCalculator.java
forester/java/src/org/forester/surfacing/BasicGenomeWideCombinableDomains.java
forester/java/src/org/forester/surfacing/CombinableDomains.java
forester/java/src/org/forester/surfacing/CombinationsBasedPairwiseDomainSimilarity.java
forester/java/src/org/forester/surfacing/DomainArchitectureBasedGenomeSimilarityCalculator.java
forester/java/src/org/forester/surfacing/DomainCountsDifferenceUtil.java
forester/java/src/org/forester/surfacing/DomainLengths.java
forester/java/src/org/forester/surfacing/DomainLengthsTable.java
forester/java/src/org/forester/surfacing/DomainParsimonyCalculator.java
forester/java/src/org/forester/surfacing/DomainSimilarity.java [deleted file]
forester/java/src/org/forester/surfacing/DomainSimilarityCalculator.java
forester/java/src/org/forester/surfacing/GenomeWideCombinableDomains.java
forester/java/src/org/forester/surfacing/MappingResults.java
forester/java/src/org/forester/surfacing/PairwiseGenomeComparator.java
forester/java/src/org/forester/surfacing/PrintableDomainSimilarity.java
forester/java/src/org/forester/surfacing/PrintableSpeciesSpecificDcData.java
forester/java/src/org/forester/surfacing/SpeciesSpecificDcData.java
forester/java/src/org/forester/surfacing/SurfacingConstants.java
forester/java/src/org/forester/surfacing/SurfacingUtil.java
forester/java/src/org/forester/surfacing/TestSurfacing.java
forester/java/src/org/forester/test/Test.java