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author	tcofoegbu <tcnofoegbu@dundee.ac.uk>
	Mon, 11 Apr 2016 15:28:12 +0000 (16:28 +0100)
committer	tcofoegbu <tcnofoegbu@dundee.ac.uk>
	Mon, 11 Apr 2016 15:28:12 +0000 (16:28 +0100)
commit	3ef0beaad016ac06b8947feb0f36d06b1e956d59
tree	df1fcc0149ae46c04187845e0122682275f71e0a	tree \| snapshot
parent	d82ec00f14199ef0ce21bd5bc70a59142b7c4b07	commit \| diff

JAL-2054 Renamed getStartEnd in AlignFrame to getVisibleStartAndEndIndex, and refactored method to Alignment class, and created a test for it accordingly