JAL-3551 working proof of concept of Jalview driving PyMOL
authorgmungoc <g.m.carstairs@dundee.ac.uk>
Fri, 13 Mar 2020 21:48:21 +0000 (21:48 +0000)
committergmungoc <g.m.carstairs@dundee.ac.uk>
Fri, 13 Mar 2020 21:48:21 +0000 (21:48 +0000)
commit42f4227ed213d422a87d3b22fc9e85d14ffaf53f
tree2b5d75f92512e8abb60338d53cc66f55585630db
parent09ec96d9ac0fd717d6cf32417d9916cca781d92c
JAL-3551 working proof of concept of Jalview driving PyMOL
33 files changed:
src/jalview/appletgui/AppletJmolBinding.java
src/jalview/appletgui/ExtJmol.java
src/jalview/ext/jmol/JalviewJmolBinding.java
src/jalview/ext/jmol/JmolCommands.java
src/jalview/ext/pymol/PymolCommands.java [new file with mode: 0644]
src/jalview/ext/pymol/PymolManager.java [new file with mode: 0644]
src/jalview/ext/rbvi/chimera/ChimeraCommands.java
src/jalview/ext/rbvi/chimera/ChimeraXCommands.java
src/jalview/ext/rbvi/chimera/JalviewChimeraBinding.java
src/jalview/gui/AppJmol.java
src/jalview/gui/ChimeraViewFrame.java
src/jalview/gui/JalviewChimeraXBindingModel.java
src/jalview/gui/Preferences.java
src/jalview/gui/PymolBindingModel.java [new file with mode: 0644]
src/jalview/gui/PymolViewer.java [new file with mode: 0644]
src/jalview/gui/StructureViewer.java
src/jalview/gui/StructureViewerBase.java
src/jalview/jbgui/GPreferences.java
src/jalview/structure/AtomSpecModel.java
src/jalview/structure/StructureCommand.java [new file with mode: 0644]
src/jalview/structure/StructureCommandI.java [new file with mode: 0644]
src/jalview/structure/StructureCommandsBase.java
src/jalview/structure/StructureCommandsFactory.java [deleted file]
src/jalview/structure/StructureCommandsI.java
src/jalview/structures/models/AAStructureBindingModel.java
test/jalview/ext/jmol/JmolCommandsTest.java
test/jalview/ext/pymol/PymolCommandsTest.java [new file with mode: 0644]
test/jalview/ext/pymol/PymolManagerTest.java [new file with mode: 0644]
test/jalview/ext/rbvi/chimera/ChimeraCommandsTest.java
test/jalview/ext/rbvi/chimera/ChimeraXCommandsTest.java
test/jalview/ext/rbvi/chimera/JalviewChimeraView.java
test/jalview/structure/AtomSpecModelTest.java
test/jalview/structures/models/AAStructureBindingModelTest.java