source.jalview.org Git - jalview.git/commit

git://source.jalview.org / jalview.git / commit

author	hansonr <hansonr@STO24954W.ad.stolaf.edu>
	Fri, 10 May 2019 12:03:42 +0000 (07:03 -0500)
committer	hansonr <hansonr@STO24954W.ad.stolaf.edu>
	Fri, 10 May 2019 12:03:42 +0000 (07:03 -0500)
commit	53b2ec17b88081e402f60deab2723750bc4867d1
tree	a6549b9fa36711c407b331da58765503b420bcaa	tree \| snapshot
parent	6babd7c2387996384a49042ed4290095c13d5ed9	commit \| diff

JAL-3253 jalview.bin.Instance handles all singleton instances -
preliminary

59 files changed:

src/jalview/analysis/AlignmentSorter.java		diff \| blob \| history
src/jalview/analysis/scoremodels/ScoreModels.java		diff \| blob \| history
src/jalview/bin/Cache.java		diff \| blob \| history
src/jalview/bin/Instance.java	[new file with mode: 0644]	blob
src/jalview/bin/Jalview.java		diff \| blob \| history
src/jalview/ext/ensembl/EnsemblInfo.java		diff \| blob \| history
src/jalview/fts/service/pdb/PDBFTSRestClient.java		diff \| blob \| history
src/jalview/fts/service/uniprot/UniProtFTSRestClient.java		diff \| blob \| history
src/jalview/gui/AlignFrame.java		diff \| blob \| history
src/jalview/gui/AlignViewport.java		diff \| blob \| history
src/jalview/gui/AnnotationLabels.java		diff \| blob \| history
src/jalview/gui/CrossRefAction.java		diff \| blob \| history
src/jalview/gui/Desktop.java		diff \| blob \| history
src/jalview/gui/JalviewDialog.java		diff \| blob \| history
src/jalview/gui/Preferences.java		diff \| blob \| history
src/jalview/gui/SliderPanel.java		diff \| blob \| history
src/jalview/gui/SplashScreen.java		diff \| blob \| history
src/jalview/gui/SplitFrame.java		diff \| blob \| history
src/jalview/gui/StructureChooser.java		diff \| blob \| history
src/jalview/gui/StructureViewerBase.java		diff \| blob \| history
src/jalview/gui/VamsasApplication.java		diff \| blob \| history
src/jalview/gui/WsJobParameters.java		diff \| blob \| history
src/jalview/gui/WsParamSetManager.java		diff \| blob \| history
src/jalview/gui/WsPreferences.java		diff \| blob \| history
src/jalview/httpserver/HttpServer.java		diff \| blob \| history
src/jalview/io/FileLoader.java		diff \| blob \| history
src/jalview/io/VamsasAppDatastore.java		diff \| blob \| history
src/jalview/io/gff/SequenceOntologyFactory.java		diff \| blob \| history
src/jalview/io/vamsas/Sequencemapping.java		diff \| blob \| history
src/jalview/project/Jalview2XML.java		diff \| blob \| history
src/jalview/rest/RestHandler.java		diff \| blob \| history
src/jalview/schemes/AnnotationColourGradient.java		diff \| blob \| history
src/jalview/schemes/ColourSchemeProperty.java		diff \| blob \| history
src/jalview/schemes/RNAHelicesColour.java		diff \| blob \| history
src/jalview/structure/StructureImportSettings.java		diff \| blob \| history
src/jalview/structure/StructureSelectionManager.java		diff \| blob \| history
src/jalview/urls/IdOrgSettings.java		diff \| blob \| history
src/jalview/ws/SequenceFetcherFactory.java		diff \| blob \| history
src/jalview/ws/jws1/Discoverer.java		diff \| blob \| history
src/jalview/ws/jws2/Jws2Discoverer.java		diff \| blob \| history
src/jalview/ws/jws2/SequenceAnnotationWSClient.java		diff \| blob \| history
src/jalview/ws/jws2/jabaws2/Jws2Instance.java		diff \| blob \| history
src/jalview/ws/jws2/jabaws2/Jws2InstanceFactory.java		diff \| blob \| history
src/jalview/ws/rest/RestClient.java		diff \| blob \| history
src/jalview/ws/sifts/SiftsSettings.java		diff \| blob \| history
test/jalview/ext/jmol/JmolViewerTest.java		diff \| blob \| history
test/jalview/ext/rbvi/chimera/JalviewChimeraView.java		diff \| blob \| history
test/jalview/gui/AlignFrameTest.java		diff \| blob \| history
test/jalview/gui/AlignViewportTest.java		diff \| blob \| history
test/jalview/gui/FreeUpMemoryTest.java		diff \| blob \| history
test/jalview/gui/SeqPanelTest.java		diff \| blob \| history
test/jalview/io/AnnotatedPDBFileInputTest.java		diff \| blob \| history
test/jalview/io/CrossRef2xmlTests.java		diff \| blob \| history
test/jalview/io/FeaturesFileTest.java		diff \| blob \| history
test/jalview/io/Jalview2xmlBase.java		diff \| blob \| history
test/jalview/io/JalviewExportPropertiesTests.java		diff \| blob \| history
test/jalview/project/Jalview2xmlTests.java		diff \| blob \| history
test/jalview/schemes/ColourSchemesTest.java		diff \| blob \| history
test/jalview/structure/StructureSelectionManagerTest.java		diff \| blob \| history

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