source.jalview.org Git - jalview.git/commit

git://source.jalview.org / jalview.git / commit

author	cmzmasek@gmail.com <cmzmasek@gmail.com@ca865154-3058-d1c3-3e42-d8f55a55bdbd>
	Sat, 29 Dec 2012 20:32:33 +0000 (20:32 +0000)
committer	cmzmasek@gmail.com <cmzmasek@gmail.com@ca865154-3058-d1c3-3e42-d8f55a55bdbd>
	Sat, 29 Dec 2012 20:32:33 +0000 (20:32 +0000)
commit	656be28debec520e0e35a8b311114398a40ea366
tree	8e401ed289a145a7be8d4b8156faa2843d082d38	tree \| snapshot
parent	d8056e0592931d3bcbb6df18a7e2a9a7382c0a0f	commit \| diff

moved to: https://sites.google.com/site/cmzmasek/home/software/forester

279 files changed:

forester/java/src/org/forester/analysis/AncestralTaxonomyInference.java		diff \| blob \| history
forester/java/src/org/forester/analysis/AncestralTaxonomyInferenceException.java		diff \| blob \| history
forester/java/src/org/forester/analysis/TaxonomyDataManager.java		diff \| blob \| history
forester/java/src/org/forester/application/confadd.java		diff \| blob \| history
forester/java/src/org/forester/application/count_support.java		diff \| blob \| history
forester/java/src/org/forester/application/decorator.java		diff \| blob \| history
forester/java/src/org/forester/application/gene_tree_preprocess.java		diff \| blob \| history
forester/java/src/org/forester/application/goac.java		diff \| blob \| history
forester/java/src/org/forester/application/gsdi.java		diff \| blob \| history
forester/java/src/org/forester/application/mcc.java		diff \| blob \| history
forester/java/src/org/forester/application/nhx_too.java		diff \| blob \| history
forester/java/src/org/forester/application/nj.java		diff \| blob \| history
forester/java/src/org/forester/application/obo_tool.java		diff \| blob \| history
forester/java/src/org/forester/application/pccx.java		diff \| blob \| history
forester/java/src/org/forester/application/pfam2go_extractor.java		diff \| blob \| history
forester/java/src/org/forester/application/pfam_go.java		diff \| blob \| history
forester/java/src/org/forester/application/pfamacc2go.java		diff \| blob \| history
forester/java/src/org/forester/application/pfamacc2pfamid.java		diff \| blob \| history
forester/java/src/org/forester/application/phyloxml_converter.java		diff \| blob \| history
forester/java/src/org/forester/application/rio.java		diff \| blob \| history
forester/java/src/org/forester/application/strip.java		diff \| blob \| history
forester/java/src/org/forester/application/support_statistics.java		diff \| blob \| history
forester/java/src/org/forester/application/support_transfer.java		diff \| blob \| history
forester/java/src/org/forester/application/surfacing.java		diff \| blob \| history
forester/java/src/org/forester/archaeopteryx/AptxUtil.java		diff \| blob \| history
forester/java/src/org/forester/archaeopteryx/Archaeopteryx.java		diff \| blob \| history
forester/java/src/org/forester/archaeopteryx/ArchaeopteryxA.java		diff \| blob \| history
forester/java/src/org/forester/archaeopteryx/ColorSchemeChooser.java		diff \| blob \| history
forester/java/src/org/forester/archaeopteryx/Configuration.java		diff \| blob \| history
forester/java/src/org/forester/archaeopteryx/Constants.java		diff \| blob \| history
forester/java/src/org/forester/archaeopteryx/ControlPanel.java		diff \| blob \| history
forester/java/src/org/forester/archaeopteryx/FontChooser.java		diff \| blob \| history
forester/java/src/org/forester/archaeopteryx/MainFrame.java		diff \| blob \| history
forester/java/src/org/forester/archaeopteryx/MainFrameApplet.java		diff \| blob \| history
forester/java/src/org/forester/archaeopteryx/MainFrameApplication.java		diff \| blob \| history
forester/java/src/org/forester/archaeopteryx/MainPanel.java		diff \| blob \| history
forester/java/src/org/forester/archaeopteryx/MainPanelApplets.java		diff \| blob \| history
forester/java/src/org/forester/archaeopteryx/MouseListener.java		diff \| blob \| history
forester/java/src/org/forester/archaeopteryx/NodeEditPanel.java		diff \| blob \| history
forester/java/src/org/forester/archaeopteryx/NodeFrame.java		diff \| blob \| history
forester/java/src/org/forester/archaeopteryx/NodePanel.java		diff \| blob \| history
forester/java/src/org/forester/archaeopteryx/Options.java		diff \| blob \| history
forester/java/src/org/forester/archaeopteryx/PdfExporter.java		diff \| blob \| history
forester/java/src/org/forester/archaeopteryx/Printer.java		diff \| blob \| history
forester/java/src/org/forester/archaeopteryx/TextFrame.java		diff \| blob \| history
forester/java/src/org/forester/archaeopteryx/TreeColorSet.java		diff \| blob \| history
forester/java/src/org/forester/archaeopteryx/TreeFontSet.java		diff \| blob \| history
forester/java/src/org/forester/archaeopteryx/TreePanel.java		diff \| blob \| history
forester/java/src/org/forester/archaeopteryx/UrlTreeReader.java		diff \| blob \| history
forester/java/src/org/forester/archaeopteryx/WebLink.java		diff \| blob \| history
forester/java/src/org/forester/archaeopteryx/phylogeny/data/RenderableDomainArchitecture.java		diff \| blob \| history
forester/java/src/org/forester/archaeopteryx/phylogeny/data/RenderablePhylogenyData.java		diff \| blob \| history
forester/java/src/org/forester/archaeopteryx/phylogeny/data/RenderableVector.java		diff \| blob \| history
forester/java/src/org/forester/archaeopteryx/tools/AncestralTaxonomyInferrer.java		diff \| blob \| history
forester/java/src/org/forester/archaeopteryx/tools/Blast.java		diff \| blob \| history
forester/java/src/org/forester/archaeopteryx/tools/GoAnnotation.java		diff \| blob \| history
forester/java/src/org/forester/archaeopteryx/tools/ImageLoader.java		diff \| blob \| history
forester/java/src/org/forester/archaeopteryx/tools/PhyloInferenceDialog.java		diff \| blob \| history
forester/java/src/org/forester/archaeopteryx/tools/PhylogeneticInferenceOptions.java		diff \| blob \| history
forester/java/src/org/forester/archaeopteryx/tools/PhylogeneticInferrer.java		diff \| blob \| history
forester/java/src/org/forester/archaeopteryx/tools/ProcessPool.java		diff \| blob \| history
forester/java/src/org/forester/archaeopteryx/tools/ProcessRunning.java		diff \| blob \| history
forester/java/src/org/forester/archaeopteryx/tools/SequenceDataRetriver.java		diff \| blob \| history
forester/java/src/org/forester/archaeopteryx/webservices/PhylogeniesWebserviceClient.java		diff \| blob \| history
forester/java/src/org/forester/archaeopteryx/webservices/WebserviceUtil.java		diff \| blob \| history
forester/java/src/org/forester/datastructures/Queue.java		diff \| blob \| history
forester/java/src/org/forester/development/AbstractRenderer.java		diff \| blob \| history
forester/java/src/org/forester/development/DevelopmentTools.java		diff \| blob \| history
forester/java/src/org/forester/development/HmmerRest.java		diff \| blob \| history
forester/java/src/org/forester/development/MsaRenderer.java		diff \| blob \| history
forester/java/src/org/forester/development/ResidueRenderer.java		diff \| blob \| history
forester/java/src/org/forester/development/Test.java		diff \| blob \| history
forester/java/src/org/forester/development/Time.java		diff \| blob \| history
forester/java/src/org/forester/evoinference/TestPhylogenyReconstruction.java		diff \| blob \| history
forester/java/src/org/forester/evoinference/distance/NeighborJoining.java		diff \| blob \| history
forester/java/src/org/forester/evoinference/distance/PairwiseDistanceCalculator.java		diff \| blob \| history
forester/java/src/org/forester/evoinference/matrix/character/BasicCharacterStateMatrix.java		diff \| blob \| history
forester/java/src/org/forester/evoinference/matrix/character/CharacterStateMatrix.java		diff \| blob \| history
forester/java/src/org/forester/evoinference/matrix/character/DiscreteState.java		diff \| blob \| history
forester/java/src/org/forester/evoinference/matrix/distance/BasicSymmetricalDistanceMatrix.java		diff \| blob \| history
forester/java/src/org/forester/evoinference/matrix/distance/DistanceMatrix.java		diff \| blob \| history
forester/java/src/org/forester/evoinference/parsimony/DolloParsimony.java		diff \| blob \| history
forester/java/src/org/forester/evoinference/parsimony/FitchParsimony.java		diff \| blob \| history
forester/java/src/org/forester/evoinference/tools/BootstrapResampler.java		diff \| blob \| history
forester/java/src/org/forester/go/BasicGoRelationship.java		diff \| blob \| history
forester/java/src/org/forester/go/BasicGoSubset.java		diff \| blob \| history
forester/java/src/org/forester/go/BasicGoTerm.java		diff \| blob \| history
forester/java/src/org/forester/go/BasicGoXRef.java		diff \| blob \| history
forester/java/src/org/forester/go/GoId.java		diff \| blob \| history
forester/java/src/org/forester/go/GoNameSpace.java		diff \| blob \| history
forester/java/src/org/forester/go/GoRelationship.java		diff \| blob \| history
forester/java/src/org/forester/go/GoSubset.java		diff \| blob \| history
forester/java/src/org/forester/go/GoTerm.java		diff \| blob \| history
forester/java/src/org/forester/go/GoUtils.java		diff \| blob \| history
forester/java/src/org/forester/go/GoXRef.java		diff \| blob \| history
forester/java/src/org/forester/go/Mapping.java		diff \| blob \| history
forester/java/src/org/forester/go/OBOparser.java		diff \| blob \| history
forester/java/src/org/forester/go/PfamToGoMapping.java		diff \| blob \| history
forester/java/src/org/forester/go/TestGo.java		diff \| blob \| history
forester/java/src/org/forester/go/etc/MetaOntologizer.java		diff \| blob \| history
forester/java/src/org/forester/io/parsers/FastaParser.java		diff \| blob \| history
forester/java/src/org/forester/io/parsers/GeneralMsaParser.java		diff \| blob \| history
forester/java/src/org/forester/io/parsers/HmmPfamOutputParser.java		diff \| blob \| history
forester/java/src/org/forester/io/parsers/HmmscanPerDomainTableParser.java		diff \| blob \| history
forester/java/src/org/forester/io/parsers/PhylogenyParser.java		diff \| blob \| history
forester/java/src/org/forester/io/parsers/SymmetricalDistanceMatrixParser.java		diff \| blob \| history
forester/java/src/org/forester/io/parsers/nexus/NexusBinaryStatesMatrixParser.java		diff \| blob \| history
forester/java/src/org/forester/io/parsers/nexus/NexusConstants.java		diff \| blob \| history
forester/java/src/org/forester/io/parsers/nexus/NexusFormatException.java		diff \| blob \| history
forester/java/src/org/forester/io/parsers/nexus/NexusPhylogeniesParser.java		diff \| blob \| history
forester/java/src/org/forester/io/parsers/nhx/NHXFormatException.java		diff \| blob \| history
forester/java/src/org/forester/io/parsers/nhx/NHXParser.java		diff \| blob \| history
forester/java/src/org/forester/io/parsers/nhx/NHXtags.java		diff \| blob \| history
forester/java/src/org/forester/io/parsers/phyloxml/PhyloXmlDataFormatException.java		diff \| blob \| history
forester/java/src/org/forester/io/parsers/phyloxml/PhyloXmlException.java		diff \| blob \| history
forester/java/src/org/forester/io/parsers/phyloxml/PhyloXmlHandler.java		diff \| blob \| history
forester/java/src/org/forester/io/parsers/phyloxml/PhyloXmlMapping.java		diff \| blob \| history
forester/java/src/org/forester/io/parsers/phyloxml/PhyloXmlParser.java		diff \| blob \| history
forester/java/src/org/forester/io/parsers/phyloxml/PhyloXmlUtil.java		diff \| blob \| history
forester/java/src/org/forester/io/parsers/phyloxml/XmlElement.java		diff \| blob \| history
forester/java/src/org/forester/io/parsers/phyloxml/data/AnnotationParser.java		diff \| blob \| history
forester/java/src/org/forester/io/parsers/phyloxml/data/BinaryCharactersParser.java		diff \| blob \| history
forester/java/src/org/forester/io/parsers/phyloxml/data/BranchWidthParser.java		diff \| blob \| history
forester/java/src/org/forester/io/parsers/phyloxml/data/ColorParser.java		diff \| blob \| history
forester/java/src/org/forester/io/parsers/phyloxml/data/ConfidenceParser.java		diff \| blob \| history
forester/java/src/org/forester/io/parsers/phyloxml/data/DateParser.java		diff \| blob \| history
forester/java/src/org/forester/io/parsers/phyloxml/data/DistributionParser.java		diff \| blob \| history
forester/java/src/org/forester/io/parsers/phyloxml/data/DomainArchitectureParser.java		diff \| blob \| history
forester/java/src/org/forester/io/parsers/phyloxml/data/EventParser.java		diff \| blob \| history
forester/java/src/org/forester/io/parsers/phyloxml/data/PhylogenyDataPhyloXmlParser.java		diff \| blob \| history
forester/java/src/org/forester/io/parsers/phyloxml/data/PointParser.java		diff \| blob \| history
forester/java/src/org/forester/io/parsers/phyloxml/data/PolygonParser.java		diff \| blob \| history
forester/java/src/org/forester/io/parsers/phyloxml/data/ProteinDomainParser.java		diff \| blob \| history
forester/java/src/org/forester/io/parsers/phyloxml/data/SequenceParser.java		diff \| blob \| history
forester/java/src/org/forester/io/parsers/phyloxml/data/SequenceRelationParser.java		diff \| blob \| history
forester/java/src/org/forester/io/parsers/phyloxml/data/TaxonomyParser.java		diff \| blob \| history
forester/java/src/org/forester/io/parsers/phyloxml/data/UriParser.java		diff \| blob \| history
forester/java/src/org/forester/io/parsers/tol/TolParser.java		diff \| blob \| history
forester/java/src/org/forester/io/parsers/tol/TolXmlHandler.java		diff \| blob \| history
forester/java/src/org/forester/io/parsers/tol/TolXmlMapping.java		diff \| blob \| history
forester/java/src/org/forester/io/parsers/util/PhylogenyParserException.java		diff \| blob \| history
forester/java/src/org/forester/io/writers/PhyloXmlNodeWriter.java		diff \| blob \| history
forester/java/src/org/forester/io/writers/PhylogenyWriter.java		diff \| blob \| history
forester/java/src/org/forester/msa/BasicMsa.java		diff \| blob \| history
forester/java/src/org/forester/msa/ClustalOmega.java		diff \| blob \| history
forester/java/src/org/forester/msa/Mafft.java		diff \| blob \| history
forester/java/src/org/forester/msa/Msa.java		diff \| blob \| history
forester/java/src/org/forester/msa/MsaFormatException.java		diff \| blob \| history
forester/java/src/org/forester/msa/MsaInferrer.java		diff \| blob \| history
forester/java/src/org/forester/msa/MsaMethods.java		diff \| blob \| history
forester/java/src/org/forester/msa/ResampleableMsa.java		diff \| blob \| history
forester/java/src/org/forester/pccx/BasicExternalNodeBasedCoverageExtender.java		diff \| blob \| history
forester/java/src/org/forester/pccx/BranchCountingBasedScoringMethod.java		diff \| blob \| history
forester/java/src/org/forester/pccx/BranchLengthBasedScoringMethod.java		diff \| blob \| history
forester/java/src/org/forester/pccx/Coverage.java		diff \| blob \| history
forester/java/src/org/forester/pccx/CoverageCalculationMethod.java		diff \| blob \| history
forester/java/src/org/forester/pccx/CoverageCalculationOptions.java		diff \| blob \| history
forester/java/src/org/forester/pccx/CoverageCalculator.java		diff \| blob \| history
forester/java/src/org/forester/pccx/CoverageExtender.java		diff \| blob \| history
forester/java/src/org/forester/pccx/ExternalNodeBasedCoverage.java		diff \| blob \| history
forester/java/src/org/forester/pccx/ExternalNodeBasedCoverageMethod.java		diff \| blob \| history
forester/java/src/org/forester/pccx/ExternalNodeBasedCoverageMethodOptions.java		diff \| blob \| history
forester/java/src/org/forester/pccx/LogBranchLengthBasedScoringMethod.java		diff \| blob \| history
forester/java/src/org/forester/pccx/ModelingUtils.java		diff \| blob \| history
forester/java/src/org/forester/pccx/ScoringMethodForExternalNode.java		diff \| blob \| history
forester/java/src/org/forester/pccx/TestPccx.java		diff \| blob \| history
forester/java/src/org/forester/phylogeny/Phylogeny.java		diff \| blob \| history
forester/java/src/org/forester/phylogeny/PhylogenyBranch.java		diff \| blob \| history
forester/java/src/org/forester/phylogeny/PhylogenyMethods.java		diff \| blob \| history
forester/java/src/org/forester/phylogeny/PhylogenyNode.java		diff \| blob \| history
forester/java/src/org/forester/phylogeny/data/Annotation.java		diff \| blob \| history
forester/java/src/org/forester/phylogeny/data/BinaryCharacters.java		diff \| blob \| history
forester/java/src/org/forester/phylogeny/data/BranchColor.java		diff \| blob \| history
forester/java/src/org/forester/phylogeny/data/BranchData.java		diff \| blob \| history
forester/java/src/org/forester/phylogeny/data/BranchWidth.java		diff \| blob \| history
forester/java/src/org/forester/phylogeny/data/Confidence.java		diff \| blob \| history
forester/java/src/org/forester/phylogeny/data/Date.java		diff \| blob \| history
forester/java/src/org/forester/phylogeny/data/Distribution.java		diff \| blob \| history
forester/java/src/org/forester/phylogeny/data/DomainArchitecture.java		diff \| blob \| history
forester/java/src/org/forester/phylogeny/data/Event.java		diff \| blob \| history
forester/java/src/org/forester/phylogeny/data/Identifier.java		diff \| blob \| history
forester/java/src/org/forester/phylogeny/data/MultipleUris.java		diff \| blob \| history
forester/java/src/org/forester/phylogeny/data/NodeData.java		diff \| blob \| history
forester/java/src/org/forester/phylogeny/data/PhylogenyData.java		diff \| blob \| history
forester/java/src/org/forester/phylogeny/data/PhylogenyDataUtil.java		diff \| blob \| history
forester/java/src/org/forester/phylogeny/data/Polygon.java		diff \| blob \| history
forester/java/src/org/forester/phylogeny/data/PropertiesMap.java		diff \| blob \| history
forester/java/src/org/forester/phylogeny/data/Property.java		diff \| blob \| history
forester/java/src/org/forester/phylogeny/data/ProteinDomain.java		diff \| blob \| history
forester/java/src/org/forester/phylogeny/data/Sequence.java		diff \| blob \| history
forester/java/src/org/forester/phylogeny/data/SequenceRelation.java		diff \| blob \| history
forester/java/src/org/forester/phylogeny/data/Taxonomy.java		diff \| blob \| history
forester/java/src/org/forester/phylogeny/data/Uri.java		diff \| blob \| history
forester/java/src/org/forester/phylogeny/factories/BasicPhylogenyFactory.java		diff \| blob \| history
forester/java/src/org/forester/phylogeny/factories/ParserBasedPhylogenyFactory.java		diff \| blob \| history
forester/java/src/org/forester/phylogeny/factories/PhylogenyFactory.java		diff \| blob \| history
forester/java/src/org/forester/phylogeny/iterators/ExternalForwardIterator.java		diff \| blob \| history
forester/java/src/org/forester/phylogeny/iterators/LevelOrderTreeIterator.java		diff \| blob \| history
forester/java/src/org/forester/phylogeny/iterators/PhylogenyNodeIterator.java		diff \| blob \| history
forester/java/src/org/forester/phylogeny/iterators/PostOrderStackObject.java		diff \| blob \| history
forester/java/src/org/forester/phylogeny/iterators/PostorderTreeIterator.java		diff \| blob \| history
forester/java/src/org/forester/phylogeny/iterators/PreorderTreeIterator.java		diff \| blob \| history
forester/java/src/org/forester/protein/BasicDomain.java		diff \| blob \| history
forester/java/src/org/forester/protein/BasicProtein.java		diff \| blob \| history
forester/java/src/org/forester/protein/BinaryDomainCombination.java		diff \| blob \| history
forester/java/src/org/forester/protein/Domain.java		diff \| blob \| history
forester/java/src/org/forester/protein/DomainId.java		diff \| blob \| history
forester/java/src/org/forester/protein/Protein.java		diff \| blob \| history
forester/java/src/org/forester/protein/ProteinId.java		diff \| blob \| history
forester/java/src/org/forester/rio/RIO.java		diff \| blob \| history
forester/java/src/org/forester/sdi/GSDI.java		diff \| blob \| history
forester/java/src/org/forester/sdi/SDI.java		diff \| blob \| history
forester/java/src/org/forester/sdi/SDIR.java		diff \| blob \| history
forester/java/src/org/forester/sdi/TestGSDI.java		diff \| blob \| history
forester/java/src/org/forester/sequence/BasicSequence.java		diff \| blob \| history
forester/java/src/org/forester/sequence/Sequence.java		diff \| blob \| history
forester/java/src/org/forester/species/BasicSpecies.java		diff \| blob \| history
forester/java/src/org/forester/species/Species.java		diff \| blob \| history
forester/java/src/org/forester/surfacing/AdjactantDirectedBinaryDomainCombination.java		diff \| blob \| history
forester/java/src/org/forester/surfacing/BasicBinaryDomainCombination.java		diff \| blob \| history
forester/java/src/org/forester/surfacing/BasicCombinableDomains.java		diff \| blob \| history
forester/java/src/org/forester/surfacing/BasicDomainSimilarityCalculator.java		diff \| blob \| history
forester/java/src/org/forester/surfacing/CombinableDomains.java		diff \| blob \| history
forester/java/src/org/forester/surfacing/CombinationsBasedPairwiseDomainSimilarity.java		diff \| blob \| history
forester/java/src/org/forester/surfacing/CombinationsBasedPairwiseDomainSimilarityCalculator.java		diff \| blob \| history
forester/java/src/org/forester/surfacing/CountsBasedPairwiseDomainSimilarity.java		diff \| blob \| history
forester/java/src/org/forester/surfacing/DirectedBinaryDomainCombination.java		diff \| blob \| history
forester/java/src/org/forester/surfacing/DirectedCombinableDomains.java		diff \| blob \| history
forester/java/src/org/forester/surfacing/DomainArchitectureBasedGenomeSimilarityCalculator.java		diff \| blob \| history
forester/java/src/org/forester/surfacing/DomainCountsBasedPairwiseSimilarityCalculator.java		diff \| blob \| history
forester/java/src/org/forester/surfacing/DomainCountsDifferenceUtil.java		diff \| blob \| history
forester/java/src/org/forester/surfacing/DomainLengths.java		diff \| blob \| history
forester/java/src/org/forester/surfacing/DomainLengthsTable.java		diff \| blob \| history
forester/java/src/org/forester/surfacing/DomainParsimonyCalculator.java		diff \| blob \| history
forester/java/src/org/forester/surfacing/DomainSimilarity.java		diff \| blob \| history
forester/java/src/org/forester/surfacing/DomainSimilarityCalculator.java		diff \| blob \| history
forester/java/src/org/forester/surfacing/GenomeWideCombinableDomains.java		diff \| blob \| history
forester/java/src/org/forester/surfacing/PairwiseDomainSimilarity.java		diff \| blob \| history
forester/java/src/org/forester/surfacing/PairwiseDomainSimilarityCalculator.java		diff \| blob \| history
forester/java/src/org/forester/surfacing/PairwiseGenomeComparator.java		diff \| blob \| history
forester/java/src/org/forester/surfacing/PrintableDomainSimilarity.java		diff \| blob \| history
forester/java/src/org/forester/surfacing/PrintableSpeciesSpecificDomainSimilariyData.java		diff \| blob \| history
forester/java/src/org/forester/surfacing/ProteinCountsBasedPairwiseDomainSimilarityCalculator.java		diff \| blob \| history
forester/java/src/org/forester/surfacing/SimpleDomain.java		diff \| blob \| history
forester/java/src/org/forester/surfacing/SpeciesSpecificDomainSimilariyData.java		diff \| blob \| history
forester/java/src/org/forester/surfacing/SurfacingConstants.java		diff \| blob \| history
forester/java/src/org/forester/surfacing/SurfacingUtil.java		diff \| blob \| history
forester/java/src/org/forester/surfacing/TestSurfacing.java		diff \| blob \| history
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