JAL-2094 first pass with jalview.api.ColorI interface
authorgmungoc <g.m.carstairs@dundee.ac.uk>
Thu, 5 May 2016 13:21:55 +0000 (14:21 +0100)
committergmungoc <g.m.carstairs@dundee.ac.uk>
Thu, 5 May 2016 13:21:55 +0000 (14:21 +0100)
commit65d6d09cd08743d481d39521bb0298ea683888f8
tree41673b0d2127ef965526effedc5c3d3d24acf211
parentf74464fb7f5f0e905d64a497e10bcdf0d6e7decb
JAL-2094 first pass with jalview.api.ColorI interface
70 files changed:
examples/exampleFeatures.txt
src/MCview/AppletPDBCanvas.java
src/MCview/Atom.java
src/MCview/Bond.java
src/MCview/PDBCanvas.java
src/MCview/PDBChain.java
src/jalview/api/AlignViewportI.java
src/jalview/api/FeatureColourI.java
src/jalview/api/FeatureRenderer.java
src/jalview/api/SequenceRenderer.java
src/jalview/api/ViewStyleI.java
src/jalview/appletgui/AlignFrame.java
src/jalview/appletgui/AnnotationColourChooser.java
src/jalview/appletgui/FeatureColourChooser.java
src/jalview/appletgui/FeatureRenderer.java
src/jalview/appletgui/FeatureSettings.java
src/jalview/appletgui/IdCanvas.java
src/jalview/appletgui/OverviewPanel.java
src/jalview/appletgui/RotatableCanvas.java
src/jalview/appletgui/SeqCanvas.java
src/jalview/appletgui/SequenceRenderer.java
src/jalview/appletgui/TreeCanvas.java
src/jalview/appletgui/UserDefinedColours.java
src/jalview/controller/AlignViewController.java
src/jalview/datamodel/SequenceGroup.java
src/jalview/ext/ensembl/EnsemblGene.java
src/jalview/ext/jmol/JmolCommands.java
src/jalview/ext/rbvi/chimera/ChimeraCommands.java
src/jalview/ext/varna/VarnaCommands.java
src/jalview/gui/AlignmentPanel.java
src/jalview/gui/AnnotationExporter.java
src/jalview/gui/AppVarna.java
src/jalview/gui/FeatureColourChooser.java
src/jalview/gui/FeatureRenderer.java
src/jalview/gui/FeatureSettings.java
src/jalview/gui/IdCanvas.java
src/jalview/gui/Jalview2XML.java
src/jalview/gui/Jalview2XML_V1.java
src/jalview/gui/RotatableCanvas.java
src/jalview/gui/SeqCanvas.java
src/jalview/gui/SequenceRenderer.java
src/jalview/gui/TextColourChooser.java
src/jalview/gui/TreeCanvas.java
src/jalview/io/AnnotationFile.java
src/jalview/io/FeaturesFile.java
src/jalview/io/HTMLOutput.java
src/jalview/io/HtmlSvgOutput.java
src/jalview/io/JSONFile.java
src/jalview/io/PDBFeatureSettings.java
src/jalview/io/packed/JalviewDataset.java
src/jalview/io/packed/ParsePackedSet.java
src/jalview/renderer/seqfeatures/FeatureRenderer.java
src/jalview/schemes/FeatureColour.java [new file with mode: 0644]
src/jalview/schemes/FeatureColourAdapter.java
src/jalview/schemes/UserColourScheme.java
src/jalview/util/ColorUtils.java
src/jalview/util/Format.java
src/jalview/viewmodel/AlignmentViewport.java
src/jalview/viewmodel/seqfeatures/FeatureRendererModel.java
src/jalview/viewmodel/seqfeatures/FeatureRendererSettings.java
src/jalview/viewmodel/styles/ViewStyle.java
src/jalview/ws/jws1/SeqSearchWSThread.java
src/jalview/ws/jws2/AADisorderClient.java
test/MCview/PDBChainTest.java
test/jalview/ext/rbvi/chimera/ChimeraCommandsTest.java
test/jalview/gui/SequenceRendererTest.java
test/jalview/io/FeaturesFileTest.java
test/jalview/schemes/FeatureColourTest.java [new file with mode: 0644]
test/jalview/util/ColorUtilsTest.java
test/jalview/viewmodel/styles/ViewStyleTest.java