in progress
authorcmzmasek@gmail.com <cmzmasek@gmail.com@ca865154-3058-d1c3-3e42-d8f55a55bdbd>
Wed, 27 Aug 2014 17:50:01 +0000 (17:50 +0000)
committercmzmasek@gmail.com <cmzmasek@gmail.com@ca865154-3058-d1c3-3e42-d8f55a55bdbd>
Wed, 27 Aug 2014 17:50:01 +0000 (17:50 +0000)
commit6b3ec0cd978bd692dfae1de3e076963283fdf322
tree2285b1e235f7d332d1aed7969f7e00ead3e046db
parent0219336cee687589e1738e206c791946df438407
in progress
26 files changed:
forester/java/src/org/forester/application/check_fasta.java
forester/java/src/org/forester/application/decorator.java
forester/java/src/org/forester/archaeopteryx/MainFrameApplication.java
forester/java/src/org/forester/archaeopteryx/TreePanel.java
forester/java/src/org/forester/archaeopteryx/phylogeny/data/RenderableMsaSequence.java
forester/java/src/org/forester/archaeopteryx/tools/PhyloInferenceDialog.java
forester/java/src/org/forester/archaeopteryx/tools/PhylogeneticInferrer.java
forester/java/src/org/forester/io/parsers/FastaParser.java
forester/java/src/org/forester/io/parsers/GeneralMsaParser.java
forester/java/src/org/forester/io/parsers/nexus/NexusConstants.java
forester/java/src/org/forester/io/parsers/nexus/NexusPhylogeniesParser.java
forester/java/src/org/forester/io/writers/SequenceWriter.java
forester/java/src/org/forester/msa/BasicMsa.java
forester/java/src/org/forester/msa/ClustalOmega.java
forester/java/src/org/forester/msa/DeleteableMsa.java
forester/java/src/org/forester/msa/Mafft.java
forester/java/src/org/forester/msa/Msa.java
forester/java/src/org/forester/msa/MsaInferrer.java
forester/java/src/org/forester/msa/MsaMethods.java
forester/java/src/org/forester/msa/ResampleableMsa.java
forester/java/src/org/forester/msa_compactor/MsaCompactor.java
forester/java/src/org/forester/phylogeny/PhylogenyMethods.java
forester/java/src/org/forester/phylogeny/data/Sequence.java
forester/java/src/org/forester/sequence/BasicSequence.java
forester/java/src/org/forester/sequence/MolecularSequence.java [moved from forester/java/src/org/forester/sequence/Sequence.java with 98% similarity]
forester/java/src/org/forester/test/Test.java