scrubbing HMM classes on spike-mungo
authorgmungoc <g.m.carstairs@dundee.ac.uk>
Mon, 13 Aug 2018 10:14:08 +0000 (11:14 +0100)
committergmungoc <g.m.carstairs@dundee.ac.uk>
Mon, 13 Aug 2018 10:14:08 +0000 (11:14 +0100)
commit6bed788b6f58e87d179a761e74505b884ddc2685
treef5577edd280da1d23f3b22b2ba1204e3faee4bd4
parent2b618ede76f5a9d2f1be7db9aad8bb3a2b10e23b
scrubbing HMM classes on spike-mungo
44 files changed:
src/jalview/datamodel/HMMNode.java [deleted file]
src/jalview/datamodel/HiddenMarkovModel.java [deleted file]
src/jalview/gui/DasSourceBrowser.java [deleted file]
src/jalview/hmmer/HMMAlign.java [deleted file]
src/jalview/hmmer/HMMBuild.java [deleted file]
src/jalview/hmmer/HMMERParamStore.java [deleted file]
src/jalview/hmmer/HMMERPreset.java [deleted file]
src/jalview/hmmer/HMMSearch.java [deleted file]
src/jalview/hmmer/HmmerCommand.java [deleted file]
src/jalview/io/HMMFile.java [deleted file]
src/jalview/schemes/HmmerColourScheme.java [deleted file]
src/jalview/schemes/HmmerGlobalBackground.java [deleted file]
src/jalview/schemes/HmmerLocalBackground.java [deleted file]
src/jalview/util/FileUtils.java [deleted file]
src/jalview/util/HMMProbabilityDistributionAnalyser.java [deleted file]
src/jalview/util/ProbabilityAnalyserKickstarter.java [deleted file]
src/jalview/workers/InformationThread.java [deleted file]
src/jalview/ws/DasSequenceFeatureFetcher.java [deleted file]
src/jalview/ws/dbsources/das/api/DasSourceRegistryI.java [deleted file]
src/jalview/ws/dbsources/das/api/jalviewSourceI.java [deleted file]
src/jalview/ws/dbsources/das/datamodel/DasSequenceSource.java [deleted file]
src/jalview/ws/dbsources/das/datamodel/DasSourceRegistry.java [deleted file]
src/jalview/ws/dbsources/das/datamodel/JalviewSource.java [deleted file]
src/jalview/ws/params/simple/DoubleParameter.java [deleted file]
src/jalview/ws/params/simple/FileParameter.java [deleted file]
src/jalview/ws/params/simple/LogarithmicParameter.java [deleted file]
src/jalview/ws/params/simple/RadioChoiceParameter.java [deleted file]
src/jalview/ws/params/simple/StringParameter.java [deleted file]
test/jalview/datamodel/HMMNodeTest.java [deleted file]
test/jalview/datamodel/HiddenMarkovModelTest.java [deleted file]
test/jalview/hmmer/HMMERTest.java [deleted file]
test/jalview/hmmer/testProps.jvprops [deleted file]
test/jalview/io/HMMFileTest.java [deleted file]
test/jalview/io/test_MADE1_hmm.txt [deleted file]
test/jalview/io/test_PKinase_hmm.txt [deleted file]
test/jalview/io/test_fn3_hmm.txt [deleted file]
test/jalview/schemes/HmmerGlobalBackgroundTest.java [deleted file]
test/jalview/schemes/HmmerLocalBackgroundTest.java [deleted file]
test/jalview/util/FileUtilsTest.java [deleted file]
test/jalview/util/HMMProbabilityDistributionAnalyserTest.java [deleted file]
test/jalview/util/Raw.csv [deleted file]
test/jalview/util/test_Fams_for_probability_analysis [deleted file]
test/jalview/util/test_hmms_for_probability_analysis [deleted file]
test/jalview/ws/seqfetcher/DasSequenceFetcher.java [deleted file]