JAL-1953 more progress on interfaces, jalview binding still problematic
authorkjvdheide <kjvanderheide@dundee.ac.uk>
Thu, 14 Dec 2017 17:00:12 +0000 (17:00 +0000)
committerkjvdheide <kjvanderheide@dundee.ac.uk>
Thu, 14 Dec 2017 17:00:12 +0000 (17:00 +0000)
commit733974a24ce2eb5755c46bbb2a41674493d04740
treea8a78d1b699ae69c34d20284d413103be8d91f6d
parentef887ebe817cd6595b6275f5f51001677c377214
JAL-1953 more progress on interfaces, jalview binding still problematic
24 files changed:
forester
src/jalview/ext/archaeopteryx/AptxConfig.java [deleted file]
src/jalview/ext/archaeopteryx/AptxControlPanel.java
src/jalview/ext/archaeopteryx/AptxFrame.java
src/jalview/ext/archaeopteryx/AptxInit.java
src/jalview/ext/archaeopteryx/AptxTreeBuilder.java
src/jalview/ext/archaeopteryx/AptxTreePanel.java
src/jalview/ext/archaeopteryx/DataConversions.java [moved from src/jalview/ext/forester/DataConversions.java with 62% similarity]
src/jalview/ext/archaeopteryx/JalviewBinding.java
src/jalview/ext/archaeopteryx/Tree.java
src/jalview/ext/archaeopteryx/TreeIterator.java
src/jalview/ext/archaeopteryx/TreeNode.java
src/jalview/ext/archaeopteryx/TreeParser.java [new file with mode: 0644]
src/jalview/ext/forester/ForesterMatrix.java
src/jalview/ext/forester/UtilityMethods.java [new file with mode: 0644]
src/jalview/ext/forester/io/TreeParser.java
src/jalview/ext/treeviewer/ExternalTreeFrame.java
src/jalview/ext/treeviewer/ExternalTreeI.java
src/jalview/ext/treeviewer/ExternalTreeIteratorI.java [deleted file]
src/jalview/ext/treeviewer/ExternalTreePanel.java
src/jalview/ext/treeviewer/ExternalTreeParserI.java
src/jalview/ext/treeviewer/LoadedTreeSequenceAssociation.java [moved from src/jalview/ext/archaeopteryx/LoadedTreeSequenceAssociation.java with 89% similarity]
test/jalview/ext/archaeopteryx/AptxPhylogenyTreeTest.java
test/jalview/ext/archaeopteryx/TreeViewTest.java